Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02193 ATGAAGAAAGCAGCGTATTCGTTCCCTGAGGAGGTCCTTGAGCACGTGTTCTCATTCATCGGGAGTGACAAGGACCGGAGCTCGATCTCGTTGGTGTGCAAGTCGTGGTACGAGATCGAGCGATGGTGCAGGCGGAGGGTGTTCGTCGGGAACTGCTACGCGGTGAGTCCGACGATGGTGATAAAGAGGTTCCCGAAGGTGAGATCCATCACCTTGAAGGGGAAACCGCACTTCGCGGACTTCAATTTGGTCCCTGAAGGTTGGGGCGGTTACGTGTTTCCTTGGATCAAGGCCATGGCAGCTGCGTATCCATTCCTTCAGGAGATCAGGCTCAAGAGGATGGTTATCACCGACGACTGCTTGGACCTCATAGCCAAATCGTTCAAGAACTTCAGGGTGTTGGTCCTCACCTCTTGCGAGGGGTTCACCACCGATGGACTTGCTGCCATTGCCGCCAATTGCAGGAATTTGAGGGAGTTGGACTTGCGGGAGAGTGAAGTGGAGGATATTTGTGGGCATTGGCTGAGCCATTTTCCCGATTCATACACATCATTGGTTTCCCTGAACATCTCTTGCTTAAGCAATGAGGTGAATTTGTCTGCACTAGAACGCCTGGTTAGTAGGTGTCCCAATCTGCAGACTCTCCGCCTCAATCGTGCTGTGCCCCTTGATAGGCTAGCCAACCTTCTTCGTGGGGCTCCTCAGCTGGTTGAGTTAGGCACTGGAGCCTACACCACTGAGATGCGACCAGAGGTCTTCGCAAACCTGGCAGCGGCATTTTCTGGGTGCAAGCAATTGAAGGGCTTGTCTGGCTTTTGGGATGTGCTCCCATCTTACCTTCCAGCTGTCTATCCTATATGCACCAGGCTGACATCGCTAAACTTGAGTTATGCCACCATTCAAAGCCCTGATCTCATCAAGCTTGTTAGTCAATGTGAGAGTTTGCAGCGATTATGGGTGCTGGATTACATAGAAGATGCCGGCCTTGATGTGCTTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCCTCGGACCCATTTGGGTTAGAACCAAATGTAGCGTTGACAGAGCAGGGTCTTGTTTCTGTTTCTGAAGGCTGCCCCAAGCTCCAGTCTGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCTCTAAGTACAATTGCCCGGAACAGGCCTAATCTGACTCGCTTTCGACTATGCATTATTGAGCCTCGAACTCCTGACTATCTTACCCTTCAGCCTCTGGATGTTGGTTTTGGAGCTATCGTAGAGCATTGCAAGAATCTTCAGCGCCTTTCCCTTTCTGGGCTTCTTACTGACCGTGTTTTTGAGTATATCGGGACTTATGGGAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCCGGAGATAGTGATTTGGGACTCCATCACGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGTTCAGTGAGTTTTGGAGCATGTAAGCTGCTGGGTCAGAAAATGCCGAGACTCAATGTGGAAGTCATTGATGAAAGAGGACCTCCAGATTCAATGCCAGAGAGCAGTCCCGTTGAGAAGCTATACATATACAGGACCATTTCCGGGCCACGATTGGACATGCCTGGCTATGTATGGACAATGGAAGCTGCTGGGTCAGAAAATGCCGAGACTCAATGTGGAAGTCATTGA 1773 0.5042 MKKAAYSFPEEVLEHVFSFIGSDKDRSSISLVCKSWYEIERWCRRRVFVGNCYAVSPTMVIKRFPKVRSITLKGKPHFADFNLVPEGWGGYVFPWIKAMAAAYPFLQEIRLKRMVITDDCLDLIAKSFKNFRVLVLTSCEGFTTDGLAAIAANCRNLRELDLRESEVEDICGHWLSHFPDSYTSLVSLNISCLSNEVNLSALERLVSRCPNLQTLRLNRAVPLDRLANLLRGAPQLVELGTGAYTTEMRPEVFANLAAAFSGCKQLKGLSGFWDVLPSYLPAVYPICTRLTSLNLSYATIQSPDLIKLVSQCESLQRLWVLDYIEDAGLDVLAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALSTIARNRPNLTRFRLCIIEPRTPDYLTLQPLDVGFGAIVEHCKNLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLGQKMPRLNVEVIDERGPPDSMPESSPVEKLYIYRTISGPRLDMPGYVWTMEAAGSENAETQCGSH* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02193 590 SMART LRR_CC_2 128 153 IPR006553 -
Rops6g02193 590 SMART LRR_CC_2 154 191 IPR006553 -
Rops6g02193 590 SMART LRR_CC_2 370 394 IPR006553 -
Rops6g02193 590 SMART LRR_CC_2 287 311 IPR006553 -
Rops6g02193 590 SMART LRR_CC_2 479 503 IPR006553 -
Rops6g02193 590 SMART LRR_CC_2 430 453 IPR006553 -
Rops6g02193 590 SUPERFAMILY RNI-like 34 533 - -
Rops6g02193 590 CDD F-box_AtTIR1-like 7 44 - -
Rops6g02193 590 Gene3D Ribonuclease Inhibitor 45 575 IPR032675 -
Rops6g02193 590 Gene3D - 1 44 - -
Rops6g02193 590 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 86 536 - -
Rops6g02193 590 Pfam Transport inhibitor response 1 protein domain 65 111 IPR041101 -
Rops6g02193 590 FunFam Transport inhibitor response 1 45 575 - -
Rops6g02193 590 FunFam Transport inhibitor response 1 4 44 - -
Rops6g02193 590 Pfam F-box 6 46 IPR041567 -
Rops6g02193 590 Pfam Leucine Rich repeat 287 308 IPR001611 GO:0005515
Rops6g02193 590 SUPERFAMILY F-box domain 7 40 IPR036047 GO:0005515
Rops6g02193 590 SMART fbox_2 8 49 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02193 Rops-Chr6 40372668 40375918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02193 K14485 - gmx:100809794 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02193 6 40372668 40375918 Rops6g02193 6 40372668 40375918 ECH
Rops8g03633 8 76451516 76455189 Rops6g02193 6 40372668 40375918 PCT