Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02039 ATGTGCAGTGCCGCCTTCGAATTCTTGGTACTTGACTTGTTGTTGCCGTCACTTGACTGGAGTTTTCTCCCTCATACAACGAGCAGAAGAATTCATTCAAATCCCCCATTCACTACAGTTCAAGAAATGGCGACAGAGACTTTTCTATTTACCTCTGAATCCGTGAATGAGGGTCACCCTGACAAGCTTTGCGACCAGGTCTCTGATGCAGTACTTGATGCCTGCCTTGAACAGGATCCTGACAGCAAGGTTGCCTGTGAGACATGCACCAAGACTAACATGGTCATGGTCTTTGGGGAGATTACAACCAAGGCCAACGTAGACTATGAGAAGATTGTTCGTGACACATGCCGCAACATTGGATTTGTGTCTGCTGATGTGGGTCTTGATGCTGACAAATGCAATGTCTTGGTCAACATTGAGCAGCAGAGCCCTGATATTGCTCAGGGTGTGCATGGCCATTTTACCAAGAGCCCAGAGGAGGTTGGTGCTGGTGACCAAGGTCTCATGTTTGGGTATGCCACTGATGAAACCCCTGAATATATGCCATTGAGTCATGTGCTTGCAACCAAATTAGGAGCTCGCCTTACTGAGGTTAGGAAGAATGGCACCTGCCCCTGGTTGAGACCAGATGGCAAGACACAAGTTACAGTTGAGTACTACAATGACAATGGTGCTATGGTTCCAGTTCGTGTCCACACTGTCCTCATTTCCACTCAACATGATGAGACTGTTACCAATGACCAAATTGCTGCAGATCTTAAGGAGCATGTTATCAAGCCTGTCATTCCTGAGAAGTACCTAGATGACAAGACCATCTTCCACCTTAATCCATCTGGTCGATTTGTCATTGGTGGTCCTCATGGTGATGCCGGTCTCACTGGAAGAAAGATTATCATTGATACCTATGGTGGTTGGGGTGCCCATGGAGGTGGTGCTTTCTCAGGAAAGGACCCTACTAAGGTTGATAGAAGTGGTGCCTATGTTGCCAGGCAGGCAGCAAAGAGTATTGTAGCAAATGGGCTTGCTCGCAGGTGCATTGTTCAAGTTTCTTATGCCATTGGTGTTCCTGAGCCTTTGTCAGTCTTTATTGACACTTATGGAACTGGAAAGATTCCCGATAAGGAGATTCTTCAAATTGTGAAGGAGAATTTTGACTTTAGACCTGGAATGATTACCATTAACTTGGACCTCAAGAGGGGTGGCAGTAGGTTCCTCAAGACAGCTGCCTATGGACACTTTGGAAGGGATGACTCAGACTTCACCTGGGAAGTTGTGAAGCCCCTCAAGTGGGAGAAACCTCAAGCTTAA 1311 0.4676 MCSAAFEFLVLDLLLPSLDWSFLPHTTSRRIHSNPPFTTVQEMATETFLFTSESVNEGHPDKLCDQVSDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTKANVDYEKIVRDTCRNIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHFTKSPEEVGAGDQGLMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDQIAADLKEHVIKPVIPEKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFIDTYGTGKIPDKEILQIVKENFDFRPGMITINLDLKRGGSRFLKTAAYGHFGRDDSDFTWEVVKPLKWEKPQA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02039 436 Hamap S-adenosylmethionine synthase [metK]. 46 436 IPR002133 GO:0004478|GO:0005524|GO:0006556
Rops6g02039 436 FunFam S-adenosylmethionine synthase 55 172 - -
Rops6g02039 436 Pfam S-adenosylmethionine synthetase, C-terminal domain 284 424 IPR022630 GO:0004478|GO:0006556
Rops6g02039 436 SUPERFAMILY S-adenosylmethionine synthetase 47 153 IPR022636 GO:0004478|GO:0006556
Rops6g02039 436 PIRSF MAT 42 435 IPR002133 GO:0004478|GO:0005524|GO:0006556
Rops6g02039 436 Gene3D - 55 323 - -
Rops6g02039 436 FunFam S-adenosylmethionine synthase 178 285 - -
Rops6g02039 436 SUPERFAMILY S-adenosylmethionine synthetase 284 433 IPR022636 GO:0004478|GO:0006556
Rops6g02039 436 NCBIfam methionine adenosyltransferase 49 429 IPR002133 GO:0004478|GO:0005524|GO:0006556
Rops6g02039 436 ProSitePatterns S-adenosylmethionine synthase signature 1. 163 173 IPR022631 GO:0004478|GO:0006556
Rops6g02039 436 ProSitePatterns S-adenosylmethionine synthase signature 2. 310 318 IPR022631 GO:0004478|GO:0006556
Rops6g02039 436 SUPERFAMILY S-adenosylmethionine synthetase 159 283 IPR022636 GO:0004478|GO:0006556
Rops6g02039 436 Gene3D - 48 286 - -
Rops6g02039 436 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 44 433 IPR002133 GO:0004478|GO:0005524|GO:0006556
Rops6g02039 436 CDD S-AdoMet_synt 49 427 - -
Rops6g02039 436 FunFam S-adenosylmethionine synthase 306 424 - -
Rops6g02039 436 Gene3D - 161 424 - -
Rops6g02039 436 Pfam S-adenosylmethionine synthetase, N-terminal domain 48 145 IPR022628 GO:0004478|GO:0006556
Rops6g02039 436 Pfam S-adenosylmethionine synthetase, central domain 161 282 IPR022629 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02039 Rops-Chr6 38372024 38375232 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02039 K00789 - pop:7495188 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03878 8 79725404 79727562 Rops6g02039 6 38372024 38375232 ECH
Rops6g02039 6 38372024 38375232 Rops6g02039 6 38372024 38375232 ECH