LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g01737	ATGGACTCCATAGCTTCACCATTTCGATTTTCATCACCCTTACCTTTCACCACCATTCGTCCTATTCCAAATCGAACATTCACCCTCAAAAGACCACGAAACCCAATCTCACTCACTTCTATCACCGTTACTCCACCAATTACTTTCGCTGTGAAATCCACACTTGCACCTTCAGAATCAACCAAAGATGAAAACGACGACGTTTCATGCTTAGCCGTTACTCCTGAAAAAGTAAAAGAGGAGCGAGCCTTATCGAAACACCTTGTTCGCGCGCTGTTTTGTTTCGCCGTTGGTTTTTGTGCATTCGGAACGTTCCGAGTTGCTCCTGCATTTGCAATTCCAGCACCTTGGACTGTTTTTCGAAGGAAGAGTAGAGAGAAAGAGAAAGTGAAGCGTCATGAGTATTCTGACTGCACCGAAAGGCTGTTGGAAACGGTGTCGTATCTGTTGAGGAGCGTAGATAAGGTTAGGAAAGGGAATGGGGAAATGAACGAGGTGGAAGGAGCGTTGAAGGCGGTGAAAACGAAGAAGGAAGAATCGCAAAAAGAGATAATGGGGAGATTGTACCCGGAGTTGAGGAAGTTGAGGAGAGACAAGGGGCAATTGGCGAAAAGAGCGAGCGACATTGTTGATGAGATATTGAAGGTGAAGAGGGAGTATGATAAATTGAAGGTGAAGGTGGTGAATGAGGAAGAGAAGGCGAGGATGGAGAGGTTGGAGCAGAGAGTGGGGGAGATGGAGCAGGAGTTCAATGGGATATGGGAGAGAATCGGTGAAATTGAGGACATGATTTCGATGAGGGAGACGGCGGCGTTGAGTTATGGAGTATTGGAAATCTCTTTCATAGAGAGGGAATGTGAGCAGCTGGTGGAGAGGTTTAAACGAGAAATAAGGGAAAAGAAAATCCAAAGTTTGCGTGCAGGCTCAGTTACCAGGCTCTCAAAATATGTCATTCAGAAAGACCTGGAAACTGTGCAAAGACAATATTTAGAACAAAAAATTCTTCCTAGCATTTTGGATGTTGAAGATCTTGGGTCATTCTTTCATCAAGATTCTATTGAGTTTGCTCAACGTTTAAAAAAGAGTCTTAAAGACTCAAGGGAGCTGCAAAAGAATTTAGAGGCTCAGATAAGAAAAAATATGAAGAAGTCTGGCAAGAAAAAGCGTCGTATTTTTTACTCCCCAGAAGAAGAGGAAAGGATTCTTTTGGACCGAGACAGAGTAGTGTCAAGGACTTGGTACAATGAAGAAAACAATAGATGGGAGATGGATCCAGTGGCTGTTCCTCATGCTGTCTCGAAAAAGCTAATAGAGTATGTCCGGATTAGGCATGATTGGGGTGCCATGTATATTGCATTAAAGGGAGAGGACAAAGAATTTTATGTAGATATAAAGGAATTTGAAATTCTTTTTGAAGATATTGGGGGTTTTGATGGGCTGTATATGAAAATGCTAGCCTGTGGCATCCCAACAGCTGTTCATCTGATGTGGATTCCTTTTTCAGAGTTGGACCTTCGCCAACAGTTTCTTGTGACATCAAGGATGTCTCGTTGGTTTTTGAGTGGCTTGTGGAATTCTGGAGTAGTCTCATATGCAAGAAATTGGATTTTTAAGAAAATTAAGGATACAACTGATGACATAATGGTGGTGATAGTGTTTCCTATTGTGGAGTTCTTAATCCCTTACCCGGTGAGGATACAATTGGGGATGGCTTGGCCAGAAGAATTATTTGAGACAGTGGACGCCACATGGTACTTGAAATGGCAATCAGATGCAGAAGCAAACTTTAAGTCCAGACAAACAGACGATGAAGTTCAATGGTTTATTTGGTTTTTAATCAGAACTGCTATATATGGGTTTGTTTTGTTTCATGTGTTCAAATTTATGAGGAGAAGAATTCCAAGGCTTCTTGGTTATGGTCCTTTGCGAAAAGATCCGAATCGGCGGAAATTGTGGCGAGTGAAGTATTACATTAAACAAAAATTGAGAAGAATCAAGGATAAGAGAAAGCAGGGCGTTGATCCCATAAAGACAGCTTTTGAGCAGATGAAGAGGGTGAAGAAACCACCAATACCATTGAAGAACTTTTCCAGCATTGAGTCTATGAAAGAGGAAATCAATGAAGTTGTAGCATTTTTGCAAAATCCAAGGGCTTTTCAAGAAATGGGTGCGCAGGCACCTCGGGGTGTTCTTATTGTGGGTGAGAGGGGAACGGGTAAGACATCTCTAGCATTGGCCATAGCTGCAGAGGCTAAGGTGCCTGTTGTTGAAATTAAGGCCCAACAGTTGGAGGCTGGGCTGTGGGTTGGACAAAGTGCATCCAATGTTCGTGAATTGTTTCAAACAGCAAGAGATTTGGCTCCTGTGATTATATTTGTGGAGGATTTTGACCTGTTTGCTGGTGTACGTGGCACGTTTATCCATACCAAAAACCAAGATCATGAAACTTTCATTAATCAACTGCTTGTGGAACTTGATGGATTTGAGAAACAAGATGGGGTTGTTTTGATGGCTACTACAAGAAATCTCAAGCAAATTGATGAAGCCTTGCAGAGGCCAGGTCGCATGGATAGAATATTTCATCTTCAAAGACCAACACAGGCGGAGAGAGAGAAAATATTGTACTTGGCTGCGAAGGAAACCATGGATGATCAGCTTATTGATTATGTAGACTGGAAGAAGGTTGCTGAGAAGACGGCTCTTTTACGACCTATTGAGTTAAAACTTGTTCCCGTGGCTTTGGAAGGAAGTGCCTTCCGGAGCAAAATTCTTGACACAGACGAATTGATGAGCTACTGTAGTTTCTTTGTGACTTTCAGTTCTGCGATCCCCCCATGGCTGCGGAAAACCAAAATTGTCAAGAAGTTAAGCAAAGTGTTGGTGAATCATCTTGGACTGACATTAACAAAACAAGATCTCCAAAATGTTGTCGATTTGATGGAACCATATGGCCAGATAAGCAATGGGATAGAGCTTTTGAGCCCTCCACTTGATTGGACTAGGGAAACCAAGTGTCCACATGCCGTCTGGGCAGCTGGTCGTGGTCTAATTGCTCTTTTATTACCAAATTTTGATGTTGTTGATAATCTCTGGCTTGAACCTCTATCCTGGCAGGGAATTGGATGTACAAAAATCACGAAAGGAAGAAATGAAGGTTCCATTAATGGGAATTTAGAATCAAGATCATATCTTGAAAAAAAGCTTGTGTTTTGTTTTGGTTCCTATGTTGCATCCCAAATGTTACTTCCTTTTGGGGAAGAAAACTTGTTGTCTTCATCTGAGATACAGCAGGCGCAAGAGATTTCTACACGAATGGTCATTCAATATGGATGGGGACCTGATGACAGTCCTTCAATTTATTACCGTAGTAATGCGGTTACAGCGTTAAGCATGGGGGATGACCATGAATATGTGATGGCAGCGAAAGTTGAAAAGATGTTCGATTTGGCGTATCTTAAAGCAAGAGAAATGCTGCAGAAAAATCGCAGAGTACTAGAAAAGATTGTAGAGGAATTACTTGAGTTCGAAATTTTGACCGGAAAGGATTTAGAGAGAATTACTGAAGATAATGGTGGAATCAGGGAGAAAGAGCCGTTCTCTCTTGGTGAAGTTCAAGCTAGCGAGCCAACATCCAGCAGCTTCCTTGAAAGAGGAAATGCATCAGGAAATGCTCTACTAACATCCTAG	3687	0.4212	MDSIASPFRFSSPLPFTTIRPIPNRTFTLKRPRNPISLTSITVTPPITFAVKSTLAPSESTKDENDDVSCLAVTPEKVKEERALSKHLVRALFCFAVGFCAFGTFRVAPAFAIPAPWTVFRRKSREKEKVKRHEYSDCTERLLETVSYLLRSVDKVRKGNGEMNEVEGALKAVKTKKEESQKEIMGRLYPELRKLRRDKGQLAKRASDIVDEILKVKREYDKLKVKVVNEEEKARMERLEQRVGEMEQEFNGIWERIGEIEDMISMRETAALSYGVLEISFIERECEQLVERFKREIREKKIQSLRAGSVTRLSKYVIQKDLETVQRQYLEQKILPSILDVEDLGSFFHQDSIEFAQRLKKSLKDSRELQKNLEAQIRKNMKKSGKKKRRIFYSPEEEERILLDRDRVVSRTWYNEENNRWEMDPVAVPHAVSKKLIEYVRIRHDWGAMYIALKGEDKEFYVDIKEFEILFEDIGGFDGLYMKMLACGIPTAVHLMWIPFSELDLRQQFLVTSRMSRWFLSGLWNSGVVSYARNWIFKKIKDTTDDIMVVIVFPIVEFLIPYPVRIQLGMAWPEELFETVDATWYLKWQSDAEANFKSRQTDDEVQWFIWFLIRTAIYGFVLFHVFKFMRRRIPRLLGYGPLRKDPNRRKLWRVKYYIKQKLRRIKDKRKQGVDPIKTAFEQMKRVKKPPIPLKNFSSIESMKEEINEVVAFLQNPRAFQEMGAQAPRGVLIVGERGTGKTSLALAIAAEAKVPVVEIKAQQLEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGTFIHTKNQDHETFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAEREKILYLAAKETMDDQLIDYVDWKKVAEKTALLRPIELKLVPVALEGSAFRSKILDTDELMSYCSFFVTFSSAIPPWLRKTKIVKKLSKVLVNHLGLTLTKQDLQNVVDLMEPYGQISNGIELLSPPLDWTRETKCPHAVWAAGRGLIALLLPNFDVVDNLWLEPLSWQGIGCTKITKGRNEGSINGNLESRSYLEKKLVFCFGSYVASQMLLPFGEENLLSSSEIQQAQEISTRMVIQYGWGPDDSPSIYYRSNAVTALSMGDDHEYVMAAKVEKMFDLAYLKAREMLQKNRRVLEKIVEELLEFEILTGKDLERITEDNGGIREKEPFSLGEVQASEPTSSSFLERGNASGNALLTS*	1229

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g01737	1228	MobiDBLite	consensus disorder prediction	1204	1228	-	-
	Rops6g01737	1228	Pfam	ATPase family associated with various cellular activities (AAA)	730	863	IPR003959	GO:0005524\|GO:0016887
	Rops6g01737	1228	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	687	898	IPR027417	-
	Rops6g01737	1228	MobiDBLite	consensus disorder prediction	1189	1228	-	-
	Rops6g01737	1228	Coils	Coil	163	183	-	-
	Rops6g01737	1228	Coils	Coil	213	249	-	-
	Rops6g01737	1228	Coils	Coil	356	383	-	-
	Rops6g01737	1228	Gene3D	-	671	883	IPR027417	-
	Rops6g01737	1228	SUPERFAMILY	FtsH protease domain-like	1000	1197	IPR037219	GO:0004176\|GO:0004222\|GO:0005524\|GO:0006508
	Rops6g01737	1228	PANTHER	METALLOPROTEASE M41 FTSH	133	1189	-	-
	Rops6g01737	1228	Gene3D	Peptidase M41	998	1194	IPR037219	GO:0004176\|GO:0004222\|GO:0005524\|GO:0006508
	Rops6g01737	1228	FunFam	ATP-dependent zinc metalloprotease FtsH 3	672	883	-	-
	Rops6g01737	1228	Pfam	Peptidase family M41	1012	1186	IPR000642	GO:0004176\|GO:0004222\|GO:0005524\|GO:0006508
	Rops6g01737	1228	Coils	Coil	279	303	-	-
	Rops6g01737	1228	SMART	AAA_5	726	866	IPR003593	GO:0016887
	Rops6g01737	1228	FunFam	ATP-dependent zinc metalloprotease FtsH 3	998	1195	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g01737	Rops-Chr6	34968702	34984445	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g01737	693	1186	Miscellaneous Gene Families	AT5G53170	29.058	3.28e-42	165

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g01737	-		-	gmx:100794385	1855.88

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops6g01737	6	34968702	34984445	Rops6g01737	6	34968702	34984445	ECH