Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01576 ATGTTCAACTTCCTCAAAAGATTATTATGCCTTCTATGTTTCCTCTTGTTATCCTTTGATGTTTCTCTGTTTGTATCTGCTTCCCTCAGAAACTTCACTTCTTGTTTGGATAATCACGAAATCAAAAACTATACTACTTTCCCATATAAAGAATCCCCTGCTTATAATTACTTCAAAATTCTCAATTTTTCAATTCAAAACCTTCGGTTTGCAGAACCTGGGATTCCTAAGCCGATTGCCATTGTACTGCCAGAGAGTTTGGAGCAGCTACTGAAAAGTGTTGCATGCAGTAGAGAAGGCTCCTTGGAAATCAGAGTAAGATGTGGTGGACATAGCTATGAAGGAACTTCCTCTGTTGCTGATGATGGCACTGATTTTGTCATTATTGACATGATGAATTTAAACCATGTTTGGGTGGATATGGAGACAACAACAGCATGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAGGCAACAGATGTACATGGATTCTCAGCTGGGTCATGTCCAACTGTAGGAGTTGGGGGGCATATTGGTGGTGGTGGATTTGGGTTGTTGTCTAGAAAATATGGACTTGCAGCTGACAATGTATTGGATGCCCTTCTTGTTGATGCCAATGGACAATTGTTAGACTGTGAAACCATGGGAGAAGATGTGTTTTGGGCTATTAGAGGAGGAGGTGGTGGTCTTTGGGGGATTGTCTATGCCTGGAAGATCCAAGTGTTGAAAGTGCCACGAATTGTAACTAGTTTCAGTGTATCTAGGACAGGCACAAAAAGTCATGTTGCCAAGCTAGTGCACAAATGGCAATATGTGGCACCCAACTTGGAAGATAACTTCTACTTGTCATGCTTTGTTGGTGCTGGTTTGCCCGAAGCTAAAACTATAGGCTTATCAGCCACTTTTAAAGGGTTTTATCTTGGTCCTAGGGCCAGTGCTATATCTATCATAAACCAGGCTTTTCCTGAATTGGGTATTGTAGAAGAAGAATGTAGAGAAATGAGTTGGATTGAGTCAATTGTTTTCTTCTCTGGCCTAAGTGATGGGGCCTCGACCTCTGACTTGAAGAATAGGTATCTGCAAGATAAAGAATATTTCAAGGCCAAATCAGATTTTGTAAAGAACCATGTTCCTCTTGTGGGCATAGAAACTGCACTAGACATCCTTGAAAAGGAGCCTAAAGGGTATGTGATTCTAGACCCTAATGGTGGGATGATGCATAATATAAGCAGTGAATCCATTGCTTTTCCCCACAGATCAGGAAACCTGTTTACAATTCAGTATCTGATCTATTGGAAAGAAGCTGACAATAACAAAAGCAGTGATTATATTGATTGGATAAGAATGTTCTATGCTTCTATGACTCCCTTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGACTTTGACCTTGGTGTTATGGAGCAAATTAGCAATGGTGCTAATATGAAAGATGCTGTGAATAATGCAAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGATTGGTGAGGGCCAAGACTCTGATTGACCCAAACAATGTTTTCACCAATGAACAAGGCATTCCTCCCATGTCGTTTGCCAGCCTCAATACCAAAGCACTGAGAACATAA 1647 0.4092 MFNFLKRLLCLLCFLLLSFDVSLFVSASLRNFTSCLDNHEIKNYTTFPYKESPAYNYFKILNFSIQNLRFAEPGIPKPIAIVLPESLEQLLKSVACSREGSLEIRVRCGGHSYEGTSSVADDGTDFVIIDMMNLNHVWVDMETTTAWVEGGATLGETYYAISQATDVHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVLDALLVDANGQLLDCETMGEDVFWAIRGGGGGLWGIVYAWKIQVLKVPRIVTSFSVSRTGTKSHVAKLVHKWQYVAPNLEDNFYLSCFVGAGLPEAKTIGLSATFKGFYLGPRASAISIINQAFPELGIVEEECREMSWIESIVFFSGLSDGASTSDLKNRYLQDKEYFKAKSDFVKNHVPLVGIETALDILEKEPKGYVILDPNGGMMHNISSESIAFPHRSGNLFTIQYLIYWKEADNNKSSDYIDWIRMFYASMTPFVSWGPRAAYINYMDFDLGVMEQISNGANMKDAVNNARVWGEKYFLSNYDRLVRAKTLIDPNNVFTNEQGIPPMSFASLNTKALRT* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01576 548 PANTHER OS08G0158400 PROTEIN 26 536 - -
Rops6g01576 548 SUPERFAMILY FAD-binding/transporter-associated domain-like 64 251 IPR036318 GO:0050660
Rops6g01576 548 Gene3D - 31 134 IPR016167 -
Rops6g01576 548 ProSiteProfiles PCMH-type FAD-binding domain profile. 74 250 IPR016166 GO:0071949
Rops6g01576 548 Gene3D - 253 467 - -
Rops6g01576 548 Pfam Berberine and berberine like 471 534 IPR012951 GO:0016491|GO:0050660
Rops6g01576 548 Gene3D - 139 535 IPR016169 -
Rops6g01576 548 Pfam FAD binding domain 78 218 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01576 Rops-Chr6 32756136 32757965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01576 30 534 Miscellaneous Gene Families AT1G30760 40.661 5.05e-126 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01576 - - gmx:100790761 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01576 6 32756136 32757965 Rops6g01576 6 32756136 32757965 ECH