Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01359 ATGGCTGGTGGCTCCAGCGCCAAGGGTTTCCAGGAAGTTAGAATTACGGTGGCCGGTGACGGCGGCACCGGAAAATCGACACTCATATCCGCCATGGCGTCGGAGTCTTTCTCTCTTTCCGTTCCGCCCGTGCTTCCACCAACTCGTTTGCCTCATAATTTGTTCCCCGATTCTGTTCCTCTCATTCTCATTGACACACCTTCAAGCTTGGGAAATCAAATGACGCAAAATGAAGAATTGAAGCGAGCTGATGCAGTGGTTATAACCTATGCTTGTAATGAGTCTGTGAGCTTTGAGCGTGTGAGTACTTACTGGCTTCCTGAACTACAGAAGTTGGAGGTGAAGGCACCTGTGATTGTGGTTGGTTGCAAGCTTGATCTTCGTGATCACAGCCGGCTAGTGAGCTTAGAGAGTCTCACCACACGTATCATGCAACAGTTCAGGGAAATTGTCACCTGTATTGAATGCTCTGCAGCTACACTTTATCAGGTCCCTGAAGTTTTTTATTTTGCACAAAAAGCGGTACTGCATCCAGTGGATCCATTGTTTGACTATGAAAGACATGCTTTAACCAATCAATGTGTAAGGGCGTTGAAAAGAATATTTGTTCTTTGTGATTGCGACATGGATGATGCCCTCAATGATGAAGAACTAAATGGATTTCAGGTTAGATGCTTCAATGCATCTCTGGAGCCATCTGAAATAGCAAAAATCAAAACAATTGTAGAGAAGAAAGTTCCTGAAGGAGTCAACTCTCTTGGTCTTACTTTTCCAGGCTTTATGTATATCCATAATATGTTTCTAAAGAAGGGGCGAACAGAGGCATTCTGGGCCGTTCTAAGAAAGTTTGGATATGATAACAATTTAAAACTTCAGGATGATTTCCTTCCAGTTCCATCTAAGCAGGCTCCTGATCAGAGTATGGAGCTGGCAAGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGATTGTTAGATACAGATAAAGATCGATCCCTACGACCTGCGGAAGTTGATAAGCTATTTGATGCTGCCCCAGAAAGTCCGTGGAATGATGCTCCATATAAGGATGCAGCTGAGAAAACTGACATGGGTTATGTAACACTGAATGGATTTCTGTCTCAGTGGGCCCTTATGACATTACTCGATCCACGGCAAAGCTTGGCTAATTTGATTTACATTGGATATAGTGGTCGTCCTGGTGATGCACTCTGTGTCACTCGTAGAAGATCAGTAGATCGCAAGATGCAAAAAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCCGGGAAATCTGCTTTGCTGTATTCTTTATTGGGAAGGCCTTTCTCAAATAATTATACTCCGACCACAGTTGAGCAGTATGCAGCAAATGTCGTTGAATTAAGAGGGGTAAGGGGAAATAAGAAAATTCTCATATTGCGTGAGATACCCGAGGATGGAATATCAAAATTTTTTTCACATCAGGATTGTTTGGCTGCTTGTGATGTAGCTGCTTTTGTGTATGACAGCTCAAATGAATCTTCATGGAAGAAATCCATCAATTTGCTACATAAGGTTGTTAGACAAGGAGAGCTATCTGGTCATAGAGTCCCATGCCTCCTTGTTGCTGCTAAGGATGATGTAACTCCATTCCCAAGAGGAGTACTAGATTCAGTTAAGGTTACTCAGGAATTGGGAATAGAGGCACCTATTCCTGTATGCATGAAATTAGGTGATTCAAATGACGTGTATCATAAGATTGTCAATGCAGCAGAACACCCTCATTTGAACATTCCAGAAACTGAGTTTACAAGGAAAAGAAAGAAGCAACACCACCAGTTTCTTCATCACTCTCTTATTTTTGTCTTAGTTGGGGCTGCTATGGCAATTGCCGGTGTGACAGCTCGTCGAGTACGTGCAGCGAAGAAGAATTCTGCTGCTTAG 1941 0.4261 MAGGSSAKGFQEVRITVAGDGGTGKSTLISAMASESFSLSVPPVLPPTRLPHNLFPDSVPLILIDTPSSLGNQMTQNEELKRADAVVITYACNESVSFERVSTYWLPELQKLEVKAPVIVVGCKLDLRDHSRLVSLESLTTRIMQQFREIVTCIECSAATLYQVPEVFYFAQKAVLHPVDPLFDYERHALTNQCVRALKRIFVLCDCDMDDALNDEELNGFQVRCFNASLEPSEIAKIKTIVEKKVPEGVNSLGLTFPGFMYIHNMFLKKGRTEAFWAVLRKFGYDNNLKLQDDFLPVPSKQAPDQSMELASEAVEFLNGIFRLLDTDKDRSLRPAEVDKLFDAAPESPWNDAPYKDAAEKTDMGYVTLNGFLSQWALMTLLDPRQSLANLIYIGYSGRPGDALCVTRRRSVDRKMQKTERNVFQCYVFGSKNAGKSALLYSLLGRPFSNNYTPTTVEQYAANVVELRGVRGNKKILILREIPEDGISKFFSHQDCLAACDVAAFVYDSSNESSWKKSINLLHKVVRQGELSGHRVPCLLVAAKDDVTPFPRGVLDSVKVTQELGIEAPIPVCMKLGDSNDVYHKIVNAAEHPHLNIPETEFTRKRKKQHHQFLHHSLIFVLVGAAMAIAGVTARRVRAAKKNSAA* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01359 646 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Rops6g01359 646 Gene3D - 492 590 IPR027417 -
Rops6g01359 646 PRINTS Transforming protein P21 ras signature 13 34 - -
Rops6g01359 646 PRINTS Transforming protein P21 ras signature 153 175 - -
Rops6g01359 646 PRINTS Transforming protein P21 ras signature 114 127 - -
Rops6g01359 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 597 IPR027417 -
Rops6g01359 646 Gene3D - 185 289 - -
Rops6g01359 646 Pfam EF hand associated 350 417 IPR013566 -
Rops6g01359 646 SMART rab_sub_5 13 178 - -
Rops6g01359 646 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Rops6g01359 646 Pfam Ras family 428 548 IPR001806 GO:0003924|GO:0005525
Rops6g01359 646 Gene3D - 291 483 - -
Rops6g01359 646 PIRSF Miro 9 646 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Rops6g01359 646 FunFam Mitochondrial Rho GTPase 291 483 - -
Rops6g01359 646 FunFam Mitochondrial Rho GTPase 490 591 - -
Rops6g01359 646 Pfam EF hand associated 229 313 IPR013567 -
Rops6g01359 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 208 IPR027417 -
Rops6g01359 646 Gene3D - 9 180 IPR027417 -
Rops6g01359 646 SUPERFAMILY EF-hand 181 377 IPR011992 -
Rops6g01359 646 ProSiteProfiles Miro domain profile. 421 592 IPR020860 GO:0003924|GO:0005525
Rops6g01359 646 PANTHER RHO FAMILY GTPASE 425 548 IPR003578 GO:0005525|GO:0007264
Rops6g01359 646 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
Rops6g01359 646 FunFam Mitochondrial Rho GTPase 185 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01359 Rops-Chr6 29128332 29136954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g01359 1 644 EF-hand Containing Proteins AT3G63150 56.522 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01359 K07870 - gmx:100806983 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g02992 8 66774737 66782841 Rops6g01359 6 29128332 29136954 PCT