Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g01116 ATGAAACGCATGGATATCTTCTGTGCTTCCCAAGCCTCAACAGCCATATGTCTTAGCATGGAACAAGCCTCATGCTCCTCTTCCAATACCATTCAACTAGGAGGCAGAGTCATTGACCGCCACAACCCCATTATCAATGACTCCAGAAGAAGCACCTCCAAAGCTGTCACCGCCCCATGTTCTTCTTCTCAGCCACCCATCAACCCCAAGCCTTACCAAAAGGCCAAGAAAAACAACTCTTCTTCCGAGCCAAATGGTCAGAACAAGAAAATTGCAACTAAAGGTAATGGTCAGAAGAAGAAAAGTACAGCGGAAAAGCTCACTGAACATGTCACCAACAGTTACTCTTCTAAGCCAATTGATAGTATTCTGAAAAGGAGTTGGCTTAAAGCACCTGCTGATTCAACCACCCCTCCTGGTTCAACTAAATCTTTGCTCAGTGACACGGCCTTCTTAGATGGTTCATCAGATAATGATCCAGTTTTGGCATTAACTAAGGTTGATAAAATAGAGGCTCAAGTTGTTTGTCAAGATAAAATCAACCCTGCATCCAAACCCTCTAGCTCTTCTCTTCCAAAATCCGGTTCCTTAGACCAGGTTGTAGTACTGAGAGTTTCTTTGCATTGCAAAGGCTGTGAAGGGAAGGTGAGGAAACACCTCTCAAGAATGCAAGGAGTTACTTCCTTCAACATTGATTTTGCTGCAAAGAAGGTGACAGTAGTTGGGGATGTGACTCCATTGAGCGTTTTAGCAAGCATATCAAAGGTGAAGAATGCACAATTTTGGCCATCATCTGCCTCAGCAGTTGGATCTGGTATCATAGAAACAGAGAAACGAAATTCATCAAATTGA 852 0.4331 MKRMDIFCASQASTAICLSMEQASCSSSNTIQLGGRVIDRHNPIINDSRRSTSKAVTAPCSSSQPPINPKPYQKAKKNNSSSEPNGQNKKIATKGNGQKKKSTAEKLTEHVTNSYSSKPIDSILKRSWLKAPADSTTPPGSTKSLLSDTAFLDGSSDNDPVLALTKVDKIEAQVVCQDKINPASKPSSSSLPKSGSLDQVVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFWPSSASAVGSGIIETEKRNSSN* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g01116 283 SUPERFAMILY HMA, heavy metal-associated domain 199 256 IPR036163 GO:0046872
Rops6g01116 283 ProSiteProfiles Heavy-metal-associated domain profile. 198 264 IPR006121 GO:0046872
Rops6g01116 283 MobiDBLite consensus disorder prediction 48 93 - -
Rops6g01116 283 Gene3D - 198 260 - -
Rops6g01116 283 PANTHER OS08G0405700 PROTEIN 4 268 IPR044526 -
Rops6g01116 283 Pfam Heavy-metal-associated domain 203 255 IPR006121 GO:0046872
Rops6g01116 283 CDD HMA 202 255 IPR006121 GO:0046872
Rops6g01116 283 MobiDBLite consensus disorder prediction 42 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g01116 Rops-Chr6 25701120 25703009 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g01116 - - gmx:100813295 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g01116 6 25701120 25703009 Rops6g01116 6 25701120 25703009 ECH
Rops8g03229 8 70711581 70713386 Rops6g01116 6 25701120 25703009 PCT