Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g00975 ATGAGTTCTTCTTCTGGTCAGAGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGAGCGGTGATTCTGCTGTTGGAAAAAGTAGCCTACTTGTTAGTTTCATCTCCAATTCTGTTGAAGATCTTGCCCCCACAATTGGTGTTGATTTTAAGATCAAGCTACTCACAGTAGGTGGGAAGAGATTGAAGCTAACTATTTGGGATACTGCTGGGCAGGAAAGGTTCAGAACGCTAACTACTTCTTACTATAGAGGAGCACAAGGAATCATTCTTGTTTATGATGTGACAAGAAGAGACACCTTTACAAACTTATCAGAAGTGTGGTCCAAAGAAGTGGAACTCTATTCAACTAATCAGGATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAGAGTCTGAAAGAGCAGTGAGCAAAGAAGAGGGTTTAGCTCTTGCCAAAGAGTTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGGAGCAATGCTTCGAGGAACTTGCACTAAAGATAATGGAAGTTCCTAGTCTTTTGGAAGAAGGATCAACAGCAGTAAAAAGGAATATTTTAAAGCAAAAACAGGAACCGCAAGCATCCCAAAATGGTGGTTGTTGCTTTTAA 636 0.3994 MSSSSGQSSGYDLSFKILLSGDSAVGKSSLLVSFISNSVEDLAPTIGVDFKIKLLTVGGKRLKLTIWDTAGQERFRTLTTSYYRGAQGIILVYDVTRRDTFTNLSEVWSKEVELYSTNQDCVKMLVGNKVDRESERAVSKEEGLALAKELGCLFFECSAKTRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKQEPQASQNGGCCF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g00975 211 SMART ran_sub_2 20 211 - -
Rops6g00975 211 Pfam Ras family 16 177 IPR001806 GO:0003924|GO:0005525
Rops6g00975 211 FunFam Ras-related protein RABC1 8 210 - -
Rops6g00975 211 NCBIfam small GTP-binding protein domain 15 171 IPR005225 GO:0005525
Rops6g00975 211 ProSiteProfiles small GTPase Rab1 family profile. 10 211 - -
Rops6g00975 211 SMART rab_sub_5 15 179 - -
Rops6g00975 211 ProSiteProfiles small GTPase Rho family profile. 8 177 - -
Rops6g00975 211 PANTHER RAS-RELATED PROTEIN RAB 14 193 - -
Rops6g00975 211 SMART rho_sub_3 17 179 IPR001806 GO:0003924|GO:0005525
Rops6g00975 211 PRINTS Transforming protein P21 ras signature 37 53 - -
Rops6g00975 211 PRINTS Transforming protein P21 ras signature 119 132 - -
Rops6g00975 211 PRINTS Transforming protein P21 ras signature 15 36 - -
Rops6g00975 211 PRINTS Transforming protein P21 ras signature 55 77 - -
Rops6g00975 211 PRINTS Transforming protein P21 ras signature 154 176 - -
Rops6g00975 211 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 197 IPR027417 -
Rops6g00975 211 CDD Rab18 15 176 - -
Rops6g00975 211 SMART arf_sub_2 5 180 - -
Rops6g00975 211 Gene3D - 8 210 IPR027417 -
Rops6g00975 211 ProSiteProfiles small GTPase Ras family profile. 6 211 IPR001806 GO:0003924|GO:0005525
Rops6g00975 211 SMART ras_sub_4 12 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g00975 Rops-Chr6 23611410 23614758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g00975 9 196 EF-hand Containing Proteins AT5G27540 26.020 2.06e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g00975 K07910 - gmx:100818801 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g00975 6 23611410 23614758 Rops6g00975 6 23611410 23614758 ECH
Rops8g03376 8 72653037 72656410 Rops6g00975 6 23611410 23614758 PCT