Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops5g00943 | ATGGTGTCTCTCAGGTTATCCTCTTTCACCCACCTTTTCTCCTCACCCTCTCCCACCACAATATCTCGCCGTTCCCCGGCCATTCTACGGAGCCGCCGCCATCCCCGGTCGAGACCACTCGCCGCCAGCTTCTCCGTTCAAAGTGGCGCGGCGGCTGAGACCAAGGACCGAGTCGATAACTCGAAGAACCGAGTCCCGGACCGAGTCATCACGCCTAGGTCACAGGACTTCAATGCTTGGTATCTCGACGTTATAGCCAACGCTGAACTCGCCGATTACGGCCCGGTTCGTGGTACAATGGTTATTCGTCCCTACGGTTACGCCATTTGGGAATCGATTCAGGAGTATTTGAATGCGAAGTTCAAGGAGACCGGGCATAGTAACATGTATTTTCCACAGTTCATCCCATACTCATTTATAGAGAAAGAAGCAAGTCATGTTGAGGGTTTCAGTCCTGAGTTAGCACTAGTGACAATTGGGGGTGGAAAGGAACTTGAAGAGAAGCTCGTGGTCCGACCGACGAGTGAAACCATTGTGAATCACATGTTTACTCAGTGGATCCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGTGGGCAAATGTCACAAGATGGGAGATGCGCACAAAACCATTTGTGAGAACTCTTGAATTTCTTTGGCAAGAAGGTCATACTGCTCATGCAACTCCAGAAGAGGCAGAAAATGAGGCTATACAGATGATTGACATCTATACCAGGTTTGCTTATGAACAAGCAGCAATACCTGTTATTGCAGGTCGAAAATCTAAAGTGGAAACATTTGCTGGTGCTTGTAAGACCTATACAATTGAGGCTATGATGGGTGACAAGAAAGCGTTACAAGCAGGAACCAGCCACAATCTTGGGCAAAACTTCGCCCGTGCCTTTGAAACACAGTTCACAGATGAAAATGGACAAAGGGAATATGTTTGGCAGACATCATGGGCAGTCAGTACCCGTTTTGTTGGAGGTATCATCATGACGCACGGAGATGATGCAGGCCTAATGCTTCCCCCGAAGATTGCACCGATACAGGTGGTAATTGTACCTATTTGGAAGAAGGATGATGAAAAAGTGGCAGTTCTAAATGCAGCATCATCTGTAAAAGAAGTTCTTCAAAGATCTGGGATTAAAGTTAAACTTGATGACTCAGAACAAAGAACCCCTGGATGGAAATTCAACTTCTGGGAAATGAAGGGAGTTCCTGTTAGAATTGAAATTGGTCCTCGTGATGTGTCTAATGGAAGTGTGGTGATATCCAGGAGAGATATCCCTGGAAAGCAAGGGAAAGTGTTCGGTATCTCTATGGAGCCTTCAACTTTGGAGGCTTATGTGAAAGACAAGTTGGATGAGATACAGACTTCTCTTTTTGAAAGGGCAATTGCATTTCGAGACAGTAATATTATAGACGTTAGCACATACGATGATCTTAAAGCTGCTATATCACAAGGCAAATGGGCAAGGGGCCCTTGGTCCGCTAGTGATGAAGATGAGTTAAGAGTAAAAGAGGAAACTGGAGCAACTATCAGGTGTTTTCCTTTTGAACAGCCACAATGGATTAAAAGATGCTTGATGACTGGAGGTCCTGCTGAAGAAGTGGCTATTTTTGCCAAATCTTACTAA | 1644 | 0.4556 | MVSLRLSSFTHLFSSPSPTTISRRSPAILRSRRHPRSRPLAASFSVQSGAAAETKDRVDNSKNRVPDRVITPRSQDFNAWYLDVIANAELADYGPVRGTMVIRPYGYAIWESIQEYLNAKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAENEAIQMIDIYTRFAYEQAAIPVIAGRKSKVETFAGACKTYTIEAMMGDKKALQAGTSHNLGQNFARAFETQFTDENGQREYVWQTSWAVSTRFVGGIIMTHGDDAGLMLPPKIAPIQVVIVPIWKKDDEKVAVLNAASSVKEVLQRSGIKVKLDDSEQRTPGWKFNFWEMKGVPVRIEIGPRDVSNGSVVISRRDIPGKQGKVFGISMEPSTLEAYVKDKLDEIQTSLFERAIAFRDSNIIDVSTYDDLKAAISQGKWARGPWSASDEDELRVKEETGATIRCFPFEQPQWIKRCLMTGGPAEEVAIFAKSY* | 548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops5g00943 | 547 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 97 | 345 | IPR006195 | - | |
| Rops5g00943 | 547 | Pfam | Prolyl-tRNA synthetase, C-terminal | 481 | 547 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | CDD | ProRS_anticodon_zinc | 341 | 547 | - | - | |
| Rops5g00943 | 547 | PRINTS | Prolyl-tRNA synthetase signature | 128 | 146 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | PRINTS | Prolyl-tRNA synthetase signature | 199 | 207 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | PRINTS | Prolyl-tRNA synthetase signature | 169 | 180 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | PRINTS | Prolyl-tRNA synthetase signature | 208 | 219 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | Gene3D | Bira Bifunctional Protein; Domain 2 | 71 | 345 | IPR045864 | - | |
| Rops5g00943 | 547 | SUPERFAMILY | Class II aaRS and biotin synthetases | 76 | 339 | IPR045864 | - | |
| Rops5g00943 | 547 | SUPERFAMILY | Class II aaRS ABD-related | 341 | 473 | - | - | |
| Rops5g00943 | 547 | SUPERFAMILY | C-terminal domain of ProRS | 476 | 547 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | CDD | ProRS_core_arch_euk | 76 | 335 | IPR033721 | - | |
| Rops5g00943 | 547 | Pfam | Anticodon binding domain | 352 | 435 | IPR004154 | - | |
| Rops5g00943 | 547 | MobiDBLite | consensus disorder prediction | 14 | 64 | - | - | |
| Rops5g00943 | 547 | Gene3D | - | 476 | 547 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | PANTHER | PROLYL-TRNA SYNTHETASE | 51 | 547 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | Hamap | Proline--tRNA ligase [proS]. | 70 | 547 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 164 | 333 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Rops5g00943 | 547 | NCBIfam | proline--tRNA ligase | 71 | 547 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Rops5g00943 | 547 | FunFam | Proline--tRNA ligase, chloroplastic/mitochondrial | 346 | 470 | - | - | |
| Rops5g00943 | 547 | FunFam | Proline--tRNA ligase, chloroplastic/mitochondrial | 476 | 547 | - | - | |
| Rops5g00943 | 547 | FunFam | Proline--tRNA ligase | 65 | 345 | - | - | |
| Rops5g00943 | 547 | Gene3D | - | 346 | 470 | IPR036621 | - | |
| Rops5g00943 | 547 | SMART | ProRS_C_1_2 | 481 | 547 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops5g00943 | Rops-Chr5 | 18240672 | 18250408 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops5g00943 | K01881 | - | gmx:100788013 | 1020.38 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Rops5g00943 | 5 | 18240672 | 18250408 | Rops5g00943 | 5 | 18240672 | 18250408 | ECH |