Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00900 ATGCTTATGATGCCCTCTTTCTTGTTTGTTGTTGAGGCACTAGAACTAGAAGGAACATCAACCATAGATGCTGTCTTGCTTTCACATCCGGATACACTTCACATTGGTGCACTCCCATATGCTATGAAGCAATTTGGACTTTCTGCCCCTGTTTATTCAACTGAGCCTGTCTACAGATTGGGCCTTCTTACTATGTATGACCAGTTCCTCTCAAGAAAGCAAGTATCGGAGTTTGATCTGTTCACGCTAGATGATATCGATTCTGCTTTCCAAAGTATAACAAGGCTAACATACTCTCAGAATCATCATTTCTCAGGCAAGGGAGAGGGAATTGTGATTGCACCTCATGTCGCTGGACATCTTTTGGGAGGTACTGTATGGAAAATTACAAAGGATGGTGAGGACATCATATATGCTGTTGATTTTAATCATCGGAAAGAAAGGCATTTGAATGGAACTGTTCTAGGTTCTTTTGTGCGGCCAGCTGTTCTAATAACTGATGCTTACAATGCTTTGAACAATCAGCCTTACAGACGTCAAAAGGACAAAGAATTTGGAGATACCTTAAAGAAGACTCTGAGGGCAGGTGGCAATGTATTACTACCTGTTGATACCGCTGGACGAGTGTTGGAACTTATTCTGATGCTGGAATCGTATTGGGCTGATGAAAACTTGATGTACCCTATATACTTTCTTACATATGTTTCATCCAGCACTATTGATTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCCATAGCAAAGTCTTTTGAACAAACTCGTGAAAATATATTTCTTTTGAAGTATATCACACTTCTGGTTAACAAGACTGATCTTGACAATGCTCCTGATGGTCCAAAGGTTATTCTAGCATCCATGGCAAGTTTGGAAGCAGGTTTTTCTCATGATATATTTGTTGAGTGGGGCAACGATGCCAAAAATCTTGTGCTTTTTACTGAAAAAGGCCAGTTTGCCACACTAGCTCGTATGCTTCAAGCTGATCCACCTCCAAAAGCTGTCAAAGTCACTGTGTCCAAGCGGGTTCCTTTGGTTGGGGAAGAACTAATTGCCTATGAGGAAGAGCAAAATCGAATAAAGAAAGAAGAAGCTTTAAAAGCGAGTCTTATAAAAGAGGAAGAATTAAAAGCTTCTCATGGGGCTGATAATAATGCTAGTGATCCAATGGTCGTTGATTCTGGCAATAATCATGTATCACAAGAAGTGGCTGGTCCTCGAGGTGGAGGATACTTGGACATATTTATTGATGGATTTGTTCCCCCTTCAACGAGTGTTGCCCCAATGTTTCGCTGTTATGAGAATACATCAGAGTGGGATGATTTTGGTGAAGTCATAAATCCAGATGATTATGTAATTAAGGATGATGACATGGACCAGACAGCAATGCATGTAGGAGGTGATATAAATGGAAAATTAGACGAAGGTGCTGCGAGTCTGATACTTGATACAAAGCCATCAAAAGTCATATCTGATGAAAGGACTGTGCAAGTCAGATGTTCATTGGTTTACATGGACTTTGAAGGTCGTTCTGACGGAAGATCCATTAAAAATATTCTCTCCCATGTGGCTCCCCTGAAGTTGGTTTTGGTGCATGGGTCAGCTGAAGCTACAGAGCATCTGAAGCAGCACTGCCTGAAGAATGTTTGTCCTCACGTTTATGCTCCCCAAATTGAAGAGACAATTGATGTCACCTCTGATTTATGTGCTTATAAGGTTCAACTATCTGAGAAGCTAATGAGTAATGTACTCTTCAAAAAGGTAGGAGATTATGAAATAGCATGGGTTGATGCTGAAGTAAGGAAGACAGAAAATGACATGCTTTCGCTGCTCCCTGTTTCCGGAGCAACTCCTCCGCATAAATCTGTTCTTGTTGGTGATTTGAAATTGGCAGATTTCAAGCAGTTCCTCTCCAGCAAGGGTGTTCAGGTGGAATTTGCTGGTGGGGCTTTGCGTTGTGGTGAATATGTAACTCTAAGGAAGGTTGGAGATGCAACTCAGAAGGGTAGCGGTTCTGGTACTCAGCAAATTGTTATTGAAGGCCCTCTGTGTGAAGATTACTATAAAATTTGTGATTATCTCTATTCACAATTTTATTTGCTTTAG 2124 0.4091 MLMMPSFLFVVEALELEGTSTIDAVLLSHPDTLHIGALPYAMKQFGLSAPVYSTEPVYRLGLLTMYDQFLSRKQVSEFDLFTLDDIDSAFQSITRLTYSQNHHFSGKGEGIVIAPHVAGHLLGGTVWKITKDGEDIIYAVDFNHRKERHLNGTVLGSFVRPAVLITDAYNALNNQPYRRQKDKEFGDTLKKTLRAGGNVLLPVDTAGRVLELILMLESYWADENLMYPIYFLTYVSSSTIDYVKSFLEWMSDSIAKSFEQTRENIFLLKYITLLVNKTDLDNAPDGPKVILASMASLEAGFSHDIFVEWGNDAKNLVLFTEKGQFATLARMLQADPPPKAVKVTVSKRVPLVGEELIAYEEEQNRIKKEEALKASLIKEEELKASHGADNNASDPMVVDSGNNHVSQEVAGPRGGGYLDIFIDGFVPPSTSVAPMFRCYENTSEWDDFGEVINPDDYVIKDDDMDQTAMHVGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCSLVYMDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKNVCPHVYAPQIEETIDVTSDLCAYKVQLSEKLMSNVLFKKVGDYEIAWVDAEVRKTENDMLSLLPVSGATPPHKSVLVGDLKLADFKQFLSSKGVQVEFAGGALRCGEYVTLRKVGDATQKGSGSGTQQIVIEGPLCEDYYKICDYLYSQFYLL* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00900 707 CDD CPSF2-like_MBL-fold 19 170 IPR035639 -
Rops5g00900 707 Pfam Beta-Casp domain 209 332 IPR022712 -
Rops5g00900 707 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 501 553 IPR011108 -
Rops5g00900 707 Coils Coil 359 379 - -
Rops5g00900 707 MobiDBLite consensus disorder prediction 383 409 - -
Rops5g00900 707 Pfam Metallo-beta-lactamase superfamily domain 20 155 IPR001279 -
Rops5g00900 707 Pfam Cleavage and polyadenylation factor 2 C-terminal 611 704 IPR025069 -
Rops5g00900 707 FunFam Cleavage and polyadenylation specificity factor subunit 2 8 222 - -
Rops5g00900 707 Gene3D - 9 224 IPR036866 -
Rops5g00900 707 SMART Beta_Casp_2 209 332 IPR022712 -
Rops5g00900 707 SUPERFAMILY Metallo-hydrolase/oxidoreductase 18 570 IPR036866 -
Rops5g00900 707 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 19 706 IPR027075 GO:0005847|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00900 Rops-Chr5 17490498 17501230 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00900 K14402 - gmx:100777002 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00900 5 17490498 17501230 Rops5g00900 5 17490498 17501230 ECH