Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00713 ATGACCCAAACCCGAAAACCCACCAACCCAAACAACCATACCCGAGAAACCATAACCCCTTCTTCTTCTTCTTTTTCAACGAGTGGCATGAAGCTAATTGTGCCCCTTCAAGGTGTGGTTCAAGGTCGTGGAGGCCTTCTTCTTGGTAGCCTCATCCCTTGTGCACTCTTCTACTTCCTTCAGTTATACCTTAAACGACGTCGTTCTGGGGGCAACCCTTCTTCACCTTCCTCCTCCTCTTCTTCTACCCTTCCACGTTCTTCTTCTCGAACCAACTTGACCACTCGTGGATCCATTTCACGGGTTCGGGTTTCTAAGCTTGCTACGTTAATTTCCAAACCTGATGATTCTCTCTATTACCTTGGCTTAGAAAGGGTATCTCAAGATCCCTATGATGCAGAAAATAACCCCAATGGAATCATTCAGTTAGGTTTGGCTGAAAACAAGTTGTGTTTGGATTTGATTGAGAAATGGGTGTTGAGGAACTTGGAGGGATCTTTGATGGGTAGTGGTGATGGGAGTTTGAGTATTAATGGGATTGCACTGTATCAGAAGTTTCATGGATTGGAGGAATTGAAAATGGCCTTGTCAGATTTTATGCAACAGGTGATGGGAGGATCAGTGAAATTTGACCCATCCAATATGATACTAACATGTGGAGCAACTCCTGCAATTGAAATACTATCTTTCTGCTTGGCAGACCATGGAAATGCATTCCTTGTCCCTACACCTTATTATCCTGGCTTTGACAGGGACGTGAGATGGCGTCCGGGGGTAGACTTGATACCTGTTCACTGTCGCAGTACTGACAATTTCAATCTAAATATCACTGCTCTTGAACAAGCATTTAGTCAAGCAAGAAAACGAGGAGTCAAAGTTCGTGGAATTCTTATCTCCAACCCATCAAATCCTGTTGGCAATATTCTGACACCAGACATACTTTACAGTCTTCTAGACTTTGCTGAAGAGAAAAACATTCACATCATTGCTGATGAAATATTTGCAGGCTCCACATATGGAAGTGAGAAGTTTGTGAGCCTAGCTGAAATTCTTGATTCAGAATATATAGACAAGAGCCGGGTTCATATAGTATATGGCCTGTCCAAAGACCTCGCACTTGCTGGCTTTAGAGTTGGGGTCATATATTCATTCAACCACAGTGTTTTGGCTGCTGCCAAGAAGTTAAGTAGATTTTCCTCTATATCTGCTCCAACCCAGAGGTTAGTTACTTCAATGCTTTTGGATAAAAGATTTATTCAGGAGTACATTGAAACCAACCGGAACAGAATAAAACAGGTGCATGATGAATTTGTGGATTGTTTAAGCAAACTAGGAATCAATTGTGCCAAGAGCAGTGCTGGTTTGTTCTGTTGGGCTAATATGAGTGGATTAATTCGACCTTACAGTGAGAAAGGAGAACTTGAGTTGTGGGAGAAGTTTATGAGTGTCGCTAAGATCAATATATCTCCTGGATCAGCCTGCCATTGCATAGAACCAGGATGGTTTCGTATTTGTTTTACTAATATGACTTTTGAGGACATCCCTCTAGTTATTGAAAGGATTAGGAAAGTTGTTGAAAGTTGTATATCTTCAAGTTGA 1599 0.4184 MTQTRKPTNPNNHTRETITPSSSSFSTSGMKLIVPLQGVVQGRGGLLLGSLIPCALFYFLQLYLKRRRSGGNPSSPSSSSSSTLPRSSSRTNLTTRGSISRVRVSKLATLISKPDDSLYYLGLERVSQDPYDAENNPNGIIQLGLAENKLCLDLIEKWVLRNLEGSLMGSGDGSLSINGIALYQKFHGLEELKMALSDFMQQVMGGSVKFDPSNMILTCGATPAIEILSFCLADHGNAFLVPTPYYPGFDRDVRWRPGVDLIPVHCRSTDNFNLNITALEQAFSQARKRGVKVRGILISNPSNPVGNILTPDILYSLLDFAEEKNIHIIADEIFAGSTYGSEKFVSLAEILDSEYIDKSRVHIVYGLSKDLALAGFRVGVIYSFNHSVLAAAKKLSRFSSISAPTQRLVTSMLLDKRFIQEYIETNRNRIKQVHDEFVDCLSKLGINCAKSSAGLFCWANMSGLIRPYSEKGELELWEKFMSVAKINISPGSACHCIEPGWFRICFTNMTFEDIPLVIERIRKVVESCISSS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00713 532 Pfam Aminotransferase class I and II 141 521 IPR004839 GO:0009058|GO:0030170
Rops5g00713 532 Gene3D Aspartate Aminotransferase, domain 1 129 520 IPR015422 GO:0003824
Rops5g00713 532 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 100 526 - -
Rops5g00713 532 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 366 379 IPR004838 GO:0003824|GO:0009058|GO:0030170
Rops5g00713 532 Gene3D - 163 415 IPR015421 GO:0003824
Rops5g00713 532 SUPERFAMILY PLP-dependent transferases 109 526 IPR015424 -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 214 234 - -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 169 - -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 360 384 - -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 177 193 - -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 236 257 - -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 326 349 - -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 290 314 - -
Rops5g00713 532 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 392 415 - -
Rops5g00713 532 MobiDBLite consensus disorder prediction 70 96 - -
Rops5g00713 532 MobiDBLite consensus disorder prediction 1 25 - -
Rops5g00713 532 CDD AAT_like 183 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00713 Rops-Chr5 12539961 12542953 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00713 K14270 - gmx:100811906 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00713 5 12539961 12542953 Rops5g00713 5 12539961 12542953 ECH