Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00708 ATGAGTTTCGCCGCATACAAGATGATGCAATGGCCCACCGGCGTCGACAACTGTGCAACCGGTTTCCTCACCCATTCCCGCGGCGGCGACTTCCCTCCACTTCACCCCGACAACCGCCTCGCCCCTCTCCCTAACCTCGTACTCACCGCTGCGAATATTCTCGAAATCTACATCGTCCGCCTCCAGCATCAACCTCCCAAACAAGCCGCTGATTCTCGCATCCTTGATGGCATTGCTGGTGCTTCGCTTGAACTCGTTTGCAATTACAGGTTGCATGGCAATGTTGAAAGCATGGCTGTGTTGAGTGTTGGGGGTGGCGATGCTTCTAGGAGGAGAGATTCTATCATCTTAACTTTTAAAGATGCAAAGATTTCGGTTCTAGAGTATGATGATTCTATTCACGGACTTCGGACCAGTTCTTTGCATTGTTTTGAGGGTCCAGAATGGCTCCATTTGAAAAGAGGCAGGGAACAATTTGCAAGAGGTCCGGTGGTAAAGGTTGACCCTCAAGGCAGGTGTGGTGGAGTTCTTGCCTATGATTTGCAAATGATAATACTAAAAACTACTCAGGCTGGTTCTGGTTTAGTTGGGGAGGATGATGCATTGGGCTCTGGAGGTGCAGTTGCTGCTCGTATTGACTCATCTTATATGATAAGTCTGCGTGACTTGGATATGAGACATGTAAAAGATTTTACATTTGTTCATGGATATATTGAACCTGTGATGGTGATCTTGCATGAACGTGAGCTTACTTGGGCTGGGCGTGTCTCATGGAAGCATCATACTTGCATGATATCAGCACTTAGTATCAGCACAACTTTGAAGCAGCATCCACTTATTTGGTCTGCTGTTAGTCTTCCCCACGATGCCTACAAACTTCTTGCAGTGCCCTCGCCAATTGGTGGTGTTCTTGTAATTGGTGCTAACACTATTCATTATCACACTCAGTCTGCTTCATGTGCATTGGCCTTGAATAGCTATGCTATTTCGCTTGATAGTAGTCAGGAGATGCCGAGATCAAGTTTCAATGTGGAACTTGACGCTGCCAATGCAACTTGGTTGTTGAGTGATGTGGCCTTGCTGTCAACAAAAACTGGTGAACTGCTATTGCTTACTCTTATTTATGATGGAAGGGTTGTACAGAGACTTGAGCTTTCCAAGTCAAAAGCTTCAGTTCTGTCATCTGGTATTACGACAATCGGAAATTCTCTGTTTTTTCTCGCCAGTCGATTAGGAGACAGTATGCTGGTGCAATTTTCTTGTGGATCAAGTGTTTCAATGTTGTCATCCAATCTAAAAGAAGAGGTTGGTGACATTGAAGTAGATGCTCCTTCAGCAAAGAGATTGCGGAGGTCACCTTCTGATGCTTTACAAGATATGGTTAGTGGTGAGGAGCTCTCCTTGTATGGATCTGCTCCAAATAAAACTGAATCAGCACAGAAATCCTTCTCGTTTGCAGTGAGGGATTCATTGATTAATGTTGGTCCTTTGAAAGATTTCTCATATGGTTTGAGAATAAATGTTGATGCAAATGCTACAGGGATAGCCAAACAGAGTAACTATGAATTGGTGTGCTGTTCTGGTCATGGAAAGAATGGTTCTGTGTGTGTTCTTAGGCAATCGATTCGCCCAGAAGTGATTACTGAGGTTGACCTTCCTGGCTGCAAAGGAGTGTGGACTGTTTATCATAAGAGTGCACGCTCTCATAATGCTGATTCTTCTAAGCTTGCTGATGATGACGATGAGTATCATGCATACCTTATTATCAGTTTGGAGGCTCGTACCATGGTACTACAAACAGCTGATCTTCTGAGTGAGGTTACTGAAAGTGTTGACTATTATGTTCAAGGAAAAACACTAGCTGCAGGGAATTTATTTGGAAGGCGTCGAGTTATCCAAGTCTACGAACGTGGTGCTCGAATTCTAGATGGTTCCTTTATGACCCAGGATATAAGTTTTGGAGCTTCTAACTCTGAATCTAATTCTGGATCTGAGAGTGCTTTAGCACTTTCTGTTTCTATAGCTGATCCATATGTCTTACTCAGAATGAGTGATGGAAGTATTCGACTTTTGATTGGAGATCCTAGTACCTGCACCATTTCTGTCACTTCTCCATCTTCATTCGAGAGCTCAAAGGGATCGGTTTCTTCTTGTACACTGTATCATGATAAAGGACCTGAGCCATGGCTAAGGAAGACAAGTACTGATGCATGGCTTTCTACTGGTGTTGATGAGGCTATTGATGGCACTGATGGTGCAGCTCAGGACCATGGGGATATTTATTGTGTTGTTTGTTATGAAAATGGTAACCTTGAAATATTTGATGTGCCCAATTTCAGTTGTGTTTTTTCTGTGGAAAATTTTATGTCTGGGAAGAGCCATCTTGTGGATGCTTTGATGAAAGAGGTGTCAAAAGATTCTCAAAAGGGGGATAAAGGTTCTGATGAAGTGGTCAACCAAGGAAGGAAGGAAAATGTTCAGAATATGAAGGTTGTAGAGGTTGCCATGCAGAGATGGTCGGGGCAGCATAGCCGCCCCTTTCTTTTTGGGATTTTGAGTGATGGAACAATTCTTTGTTACCACGCTTACCTTTATGAAAGTCCACATGGTACTTCTAAAGTCGAGGATTCAGTATCAGCTGGGGGACCTGTTGGCCTTAGCAATACTAGTGTTTCGAGGCTTCGAAATTTGAGATTTGTTCGTGTGCCCTTGGATGCACGTGCTAGGGAGGAGACATCAAATGAATCGCCTTGTCAACAAATTACTATTTTCAAGAACATTGGTAATTACGAAGGATTCTTCCTATCGGGGTCAAGACCGGCTTGGGTTATGGTGTTGAGAGAACGGCTTCGTGTTCATCCACAGCTATGTGATGGCTCTATTGTTGCTTTTACTGTCCTTCACAATTTGAACTGCAATCACGGACTCATATATGTTACATCTCAGGGTGTTTTAAAGATATGCCAATTGCCTTCTGGCTCAAACTATGACAGCTACTGGCCTGTACAGAAAATTCCACTAAAAGCCACTCCACATCAAGTAACTTACTTTGCGGAGAAGAATTTGTATCCACTTATTGTCTCGTTTCCTGTTCTTAAGCCACTAAATCAAGTTGTTTCTATGGTTGACCAAGATGTCAGCCATCAGACTGAGAGTCAGAATTTGAATTCTGATGAGTTTTATACCATTGATGAATTTGAGGTTCGTATCATGGAGCCAGAAAAGTCTGGTGGCCCTTGGCAAACAAAGGCAACAATACCCATGCAGAGTTATGAAAATGCCCTCACTGTGAGGATGGTTACACTGGTGAATACAACCTCAAAAGAAAATGAAACACTTTTAGCCATTGGTACTGCTTATGTGCAAGGAGAGGATGTTGCTGCAAGAGGACGTATCCTGCTGTTCTCTTTGGGGAAAGATACTGATAATCCACAAACTCTGGTTTCAGAGGTGTATTCGAAGGAATTAAAAGGTGCTATATCTGCCTTGGCCTCACTTCAAGGGCATCTATTAATAGCATCTGGTCCAAAAATTATTCTGCATAAGTGGACTGGCACCGAGCTGAATGGTATTGCATTTTTTGATGTGCCACCATTACATGTTGTGAGCTTAAATATAGTAAAGAACTTCATTCTTATTGGTGACATCCATGAAAGCATATACTTTCTTAGTTGGAAAGAGCAGGGTGCTCAACTTAGCTTATTAGCCAAGGATTTCGGTTCTCTTGATTGTTTTGCAACAGAATTTTTGATTGATGGAAGTACTCTGAGTCTCATGGTTTCAGATGATCAAAAAAACATCCAGATTTTTTACTATGCACCAAAGATGTCTGAGAGTTGGAAAGGACAGAAGCTTCTTTCGAGAGCTGAATTTCATGTCGGTGCCCATGTGACTAAATTCTTAAGGTTGCAGATGCTATCCACTTCTGACCGAACTGGTTCTGGTCCGGGCTCAGATAAAACCAATCGATTTGCCTTATTATTTGGTACCTTGGATGGCAGTATTGGTTGCATTGCTCCTCTTGATGAAATCACATTTCGTAGATTGCAATCTTTACAGAGAAAGCTTGTTGATGCTGTACCCCATGTTGCTGGCCTAAATCCAAAAGCTTTCAGACAGTTCCGTTCAAATGGAAAGGCCCATCGGCCTGGCCCTGACAGTATAGTTGACTGCGAGCTGCTATGCCATTATGAAATGCTTCCATTGGAGGAACAGCTTGAAATTGCTCACCAGTCATCTTTTGTAGATCAAGGAACAGTGCTGCCCATGTCTTGCCAAGTTCTTTTCTTGGCAGTTATTTATTTTGATCCAGTTGCATCTTATTATCACAATGACTGCTATAATATGGCTGATGGCTTGGGTGATAGCCATTGA 4374 0.4282 MSFAAYKMMQWPTGVDNCATGFLTHSRGGDFPPLHPDNRLAPLPNLVLTAANILEIYIVRLQHQPPKQAADSRILDGIAGASLELVCNYRLHGNVESMAVLSVGGGDASRRRDSIILTFKDAKISVLEYDDSIHGLRTSSLHCFEGPEWLHLKRGREQFARGPVVKVDPQGRCGGVLAYDLQMIILKTTQAGSGLVGEDDALGSGGAVAARIDSSYMISLRDLDMRHVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVSLPHDAYKLLAVPSPIGGVLVIGANTIHYHTQSASCALALNSYAISLDSSQEMPRSSFNVELDAANATWLLSDVALLSTKTGELLLLTLIYDGRVVQRLELSKSKASVLSSGITTIGNSLFFLASRLGDSMLVQFSCGSSVSMLSSNLKEEVGDIEVDAPSAKRLRRSPSDALQDMVSGEELSLYGSAPNKTESAQKSFSFAVRDSLINVGPLKDFSYGLRINVDANATGIAKQSNYELVCCSGHGKNGSVCVLRQSIRPEVITEVDLPGCKGVWTVYHKSARSHNADSSKLADDDDEYHAYLIISLEARTMVLQTADLLSEVTESVDYYVQGKTLAAGNLFGRRRVIQVYERGARILDGSFMTQDISFGASNSESNSGSESALALSVSIADPYVLLRMSDGSIRLLIGDPSTCTISVTSPSSFESSKGSVSSCTLYHDKGPEPWLRKTSTDAWLSTGVDEAIDGTDGAAQDHGDIYCVVCYENGNLEIFDVPNFSCVFSVENFMSGKSHLVDALMKEVSKDSQKGDKGSDEVVNQGRKENVQNMKVVEVAMQRWSGQHSRPFLFGILSDGTILCYHAYLYESPHGTSKVEDSVSAGGPVGLSNTSVSRLRNLRFVRVPLDARAREETSNESPCQQITIFKNIGNYEGFFLSGSRPAWVMVLRERLRVHPQLCDGSIVAFTVLHNLNCNHGLIYVTSQGVLKICQLPSGSNYDSYWPVQKIPLKATPHQVTYFAEKNLYPLIVSFPVLKPLNQVVSMVDQDVSHQTESQNLNSDEFYTIDEFEVRIMEPEKSGGPWQTKATIPMQSYENALTVRMVTLVNTTSKENETLLAIGTAYVQGEDVAARGRILLFSLGKDTDNPQTLVSEVYSKELKGAISALASLQGHLLIASGPKIILHKWTGTELNGIAFFDVPPLHVVSLNIVKNFILIGDIHESIYFLSWKEQGAQLSLLAKDFGSLDCFATEFLIDGSTLSLMVSDDQKNIQIFYYAPKMSESWKGQKLLSRAEFHVGAHVTKFLRLQMLSTSDRTGSGPGSDKTNRFALLFGTLDGSIGCIAPLDEITFRRLQSLQRKLVDAVPHVAGLNPKAFRQFRSNGKAHRPGPDSIVDCELLCHYEMLPLEEQLEIAHQSSFVDQGTVLPMSCQVLFLAVIYFDPVASYYHNDCYNMADGLGDSH* 1458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00708 1457 FunFam cleavage and polyadenylation specificity factor subunit 1 958 1340 - -
Rops5g00708 1457 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 113 683 IPR018846 -
Rops5g00708 1457 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 12 1412 - -
Rops5g00708 1457 Pfam CPSF A subunit region 1066 1398 IPR004871 GO:0003676|GO:0005634
Rops5g00708 1457 Gene3D - 42 431 IPR015943 GO:0005515
Rops5g00708 1457 Gene3D - 958 1340 IPR015943 GO:0005515
Rops5g00708 1457 FunFam Cleavage and polyadenylation specificity factor subunit 1 41 428 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00708 K14401 - gmx:100785543 2558.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00708 5 12461611 12487340 Rops5g00708 5 12461611 12487340 ECH