Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00707 ATGGCTTCCATTCCCACCTTCTCTTCTTCTTCTCTATTCACAATCTCAAACCCCAAACCCCATTCTTTCAAGCTCCCTTTGACCTCTATCTTTGGCACCAGAATCACCCTTGAACGCCCCGTTTCAACTCGTTCCCTTCCCAACACGAATTGCCGTGCAACTTCAGCAACGGTGTCGTTTAGCCTCCCTACTACCCCGAAACCCGAATCGGGTGCTAATGAGAAAGTTCCAAAGTGGTCAGCGAGGGCTATAAAGTCGTATGCAATGGGGGAATTGGAAGCAAGGAAGCTAAAGTATCCCAACACAGGAACTGAGGCTCTTCTTATGGGGATTTTAGTAGAAGGAACGAGTAAAGCTGCAAAATTCTTAAGAGCAAATGGAATTACTCTTTTCAAAGTTCGTGAAGAAACAGTGGAGCTACTTGGGAAATCTGACATGTATTTCTTCAGCCCTGAGCATCCTCCTTTGACTGAACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAAGAGAAATTAAAATCAGGTGGAGAAGGGGAAGTAAACGTGACTCATATACTTCTAGGAATTTGGTCACAAAAAGAATCAGCAGGTCAAAAGATCTTGGCCACTCTAGGTTTCAATGATGAAAAAGCCAATGAACTTGCTAAAGAAATTGATGGAGATATTGATTTGAGTTTCAAGAAGCAAGCTTAA 693 0.4343 MASIPTFSSSSLFTISNPKPHSFKLPLTSIFGTRITLERPVSTRSLPNTNCRATSATVSFSLPTTPKPESGANEKVPKWSARAIKSYAMGELEARKLKYPNTGTEALLMGILVEGTSKAAKFLRANGITLFKVREETVELLGKSDMYFFSPEHPPLTEPAQKALDWAIEEKLKSGGEGEVNVTHILLGIWSQKESAGQKILATLGFNDEKANELAKEIDGDIDLSFKKQA* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00707 230 Gene3D - 78 224 IPR036628 -
Rops5g00707 230 SUPERFAMILY Double Clp-N motif 78 220 IPR036628 -
Rops5g00707 230 ProSiteProfiles Clp repeat (R) domain profile. 76 221 IPR004176 -
Rops5g00707 230 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 14 225 IPR044217 -
Rops5g00707 230 Pfam Clp amino terminal domain, pathogenicity island component 179 216 IPR004176 -
Rops5g00707 230 Pfam Clp amino terminal domain, pathogenicity island component 93 142 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00707 Rops-Chr5 12452511 12456723 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00707 - - gmx:100802336 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00707 5 12452511 12456723 Rops5g00707 5 12452511 12456723 ECH