Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00540 ATGGCAAGGAAGATGCATTGTGCCTTTCAAAAGACAGGTGATGATAGTCCAAAAGTTTCAGAAGCAGGAACAGATTCCATATCAACGATATATCAGCAACGAAATAAGGTCACATCTTTGAAGGATTGTCAAGAATCTTCTCTTTCAAGGATCAACTCTGATAGTGGGTGTGCCATCATTACATTTCTCAATCTTGAGGCTGATGGAACCTGGAGAATTCTTGCCCTCCCAGTGCAGTGTCTTAATCACATTAACTTAGCTTCTGGCATGAATATGGATGGTCTGCAACTACTTTTCCCTCCACCCGTTAATAGATTGAAGATTGATCAATGTAAGGGGCCTAGAGGACCTTTGCCTCCCACTTATTCGGTCAAATCATTTACAAGAAGCCTTAATGGTTCAAATGTGCGTCGCCGATGTCAAAATAAGATTGCTAACAAAGCTTCTAAACTGAATGAATTCCCTGCGAATTCTTGTTCACAAAGTTCATTAGTTAGCAGCCATAGCTTGTTCCCTGATAGTTCTTCTGCAGTTAATTCACCTCATAAGTTCACAAGGAATACCAAGGTGAACAAGTCCCTGAAGAAAAACTCGAGGAAAAGGACAAGAAAGAAAGTTAGGCAGAGTAAGAAGCAGTTAAGTGACAGTGGCTCTAATGAGCTAGAAGTTCTTACTTCTGAAACCTGCAGCAGCAATGATGTAGATAAGGAGGTGGGGCTGATGATGTATACAACTGCACCTGAATTGTCATCTTCTGATGATAGATTAATAAAAAGTGATTGTGAAAGGAATGAGATGAATGACCACATCAACATTAGAGAAGCACCAAAAAGTTGCAACTCTTATGTTGATGAGGCAGTAATGTCAAAAGCTACTGCACCTATTGTTCAGAATTCTGCTGGAGAATGTGCTACTTTTGAATCCAAGAATCAGCTGCAAGATAGGAGCCCTGATTTTGCAGTCACTGATAGAGAAGCAAAGGACATTCAACACGTGGGAATATGCTGTTTTGATGATACACAAGACTCCTTGGTGTTGGATTCAGTTTCAATTGATTCAAAAAGTGATGAAAGTACCAATGCTGATGATATAGGAAAACGATCCAACAAGGCAAGTTGCAGAGTCACTTCAAATTCAGGAGATGGGTATTTTCTCGGTCAAAACTTAATGAATGGTATTCGCAGCAACTATGAACATAATGAGGGAACTAGGCATGGTGGTCAAAATTGCATTGGCAATGATAAGAGAGGTAAGCAAAAGAGAACAATGCCTAAGAGTTCAAGCTTCAACAAATTTGGGGGTGTTGGAACTTTGAATGGTCGAACAGGGAAGGAAAACAGTCATTCTGTCTGGAAAAAGGTTCATAAGAACAGTTCTGATGAATGTGGTGGTGATTTGAAGAAAGTAAACACAACAATGTCACATTTTGTTTCCACTGCTGAAAAGGAACCTTCGGATATCAAAAATTGTAATGCTGTTAGTGCAAATGTTGTATCAAAACTAGAGGACAAAAAACACTTGAAAAATAAAGTTGGTAGGAAATCAAAAGGTAAAATGGAACCGGTTTCAAAGAAAGGACACAGCAATTATCCTAGGAAGGGTTCCCATTTTAACAGGACTGTGTTAAATGATACTGTGAAGGATAGTGTTCAGCAGAATGATCCGTCACATATCTCATCTCGGGAAATCAGTCAACAAGGATTGAGCAGCATCTCTGGATTTAATTCTGATGTTAATTACCTGAATGCTGGGTTCCAGACCAATGGAGTTGAACAGGAAACATCTGAAATGGTTAACAGTGTACAATTTCATCTTGAGGAGTCTGATACACAAAAAAGTGCCTGCCATAGTATTGCAAACACGAAGAATGAAAATATAGACATTCAACATAGCTCATTGGCAATGCCAAGTGAGAACATCAATCAATCAAATACATCTGAGGAGCAATCTCTGGAGTCTTATAATCTTTCGGGTGATGAAGTTGGTCAAACAGTGAAAGAAGTTTCTTCTGCAGACTACAATGCACAAAACCACAGTTCTGGATCTACCCTATGGAAATGGATACCAGTTGGGAAAAAGGATACTGAATCTACTAGTTCATCACCAGAACATTCTGATGAACCAGCTAGTAAAATTTTTAACTTGGAAAGCAGTGCTGAACCAAAAATGGCCTCCATTTCTCAAAATCAGGACTCTTTGCTAAATGCAAGCAGTATGTGCACGGGTCAGATTTGCAATAAAGTTTCTTGTCTAGAGGGTGAGAATCATAAATTGAGTAATGAGGTTGCATGTTCATTGACAGAGCACATGGACAAGCATGAAGTAGCTAATCACATGATTTATGAAAGTGGAAACCCAGATATGTTAGAAAGTGATTCCAACAGAATAGCTCAAGCTGTGAATGATGCCTGTAGGGCACAACTAGCTTGTGAAGCAGTACACATGGCCACAGGTGGCCCAGTTGCCGAGTTTGAAAGACTACTTCATTTTTGTAGTCCTGTTATTTGCCAATCATCAGCCAATTCACCCAGTTGTTTGACATGCTCACAGGACCATTCTGGTGGTGTCTCACTGTGCAGACATGAGATGCCTGCCTTATCTTTGGGATGCCTGTGGCGGTGGTATGAGAAACACGGGAGCTATGGATTAGAGATAAGGGCTCAGGATTGTGAAAATACAAAGAGACTAGGTGGTGTTGGCCCTTTTCCATTTCGTGCCTACTTTGTCCCTTCTTTATCAGCAGTTCAGCTGTTTAAGAACCATGGAAATCAATGTGAAAATAGCAGTGACAAGTTTCCGAATTGTAAGGTTTCAGAGGCACGTGAAATGATTGACATTTCAAAACACTCGTCTACTGCCAGTCAGCATTCAATATTTTCTGTTCTCTTTCCTCAGCCTCACAATCAGGATGCAAGCATTCAAGCACCAAAGAATGAAGCTTCTATCAATGATGCATCTAATCCATATATCAACTCATCATGCTCTGGTGATTTGGAACTTCTTTTTGAATATTTTGAATATGAACAACCTCAACAAAGACGACCTCTATATGAAAAGATACAGGAGCTGGTTAGAGGCGATCTACCAATCCAGTCCAAAACTTATGGGGACCCAACTAAACTGGATTCAATCAACCTGCGAGATCTTCACCCTAGATCTTGGTACTCAGTTGCATGGTATCCTATTTACCGTATACCAGATGGCAACTTTCGTGCAGCTTTTTTGACTTACCATTCACTTGGACATTTGGTTCATAGAAGTACAATTTCTGATTTGCCAACTGTAGATTCTTGCATAGTATCTCCAGCTGTAGGTCTTCAAAGTTACAATGCCCAGGGTGAATGCTGGTTCCAGCTGAATCATTCTGCAATGACAGCAGAAATGCTAGGCATAAACCCTTCTATACTTCTCAAAGAACGTTTGAGGACACTTGAGGAAACAGCATCTCTTATGGCAAGAGCTGTTGTCTACAAAGGGAACCAAATCTGCACCAACAGACACCCTGATTATGAGTTTTTCCTATCTAGGAAACGGTATTAA 3540 0.4017 MARKMHCAFQKTGDDSPKVSEAGTDSISTIYQQRNKVTSLKDCQESSLSRINSDSGCAIITFLNLEADGTWRILALPVQCLNHINLASGMNMDGLQLLFPPPVNRLKIDQCKGPRGPLPPTYSVKSFTRSLNGSNVRRRCQNKIANKASKLNEFPANSCSQSSLVSSHSLFPDSSSAVNSPHKFTRNTKVNKSLKKNSRKRTRKKVRQSKKQLSDSGSNELEVLTSETCSSNDVDKEVGLMMYTTAPELSSSDDRLIKSDCERNEMNDHINIREAPKSCNSYVDEAVMSKATAPIVQNSAGECATFESKNQLQDRSPDFAVTDREAKDIQHVGICCFDDTQDSLVLDSVSIDSKSDESTNADDIGKRSNKASCRVTSNSGDGYFLGQNLMNGIRSNYEHNEGTRHGGQNCIGNDKRGKQKRTMPKSSSFNKFGGVGTLNGRTGKENSHSVWKKVHKNSSDECGGDLKKVNTTMSHFVSTAEKEPSDIKNCNAVSANVVSKLEDKKHLKNKVGRKSKGKMEPVSKKGHSNYPRKGSHFNRTVLNDTVKDSVQQNDPSHISSREISQQGLSSISGFNSDVNYLNAGFQTNGVEQETSEMVNSVQFHLEESDTQKSACHSIANTKNENIDIQHSSLAMPSENINQSNTSEEQSLESYNLSGDEVGQTVKEVSSADYNAQNHSSGSTLWKWIPVGKKDTESTSSSPEHSDEPASKIFNLESSAEPKMASISQNQDSLLNASSMCTGQICNKVSCLEGENHKLSNEVACSLTEHMDKHEVANHMIYESGNPDMLESDSNRIAQAVNDACRAQLACEAVHMATGGPVAEFERLLHFCSPVICQSSANSPSCLTCSQDHSGGVSLCRHEMPALSLGCLWRWYEKHGSYGLEIRAQDCENTKRLGGVGPFPFRAYFVPSLSAVQLFKNHGNQCENSSDKFPNCKVSEAREMIDISKHSSTASQHSIFSVLFPQPHNQDASIQAPKNEASINDASNPYINSSCSGDLELLFEYFEYEQPQQRRPLYEKIQELVRGDLPIQSKTYGDPTKLDSINLRDLHPRSWYSVAWYPIYRIPDGNFRAAFLTYHSLGHLVHRSTISDLPTVDSCIVSPAVGLQSYNAQGECWFQLNHSAMTAEMLGINPSILLKERLRTLEETASLMARAVVYKGNQICTNRHPDYEFFLSRKRY* 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00540 1179 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 10 1178 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 188 208 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 401 448 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 212 228 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 1 22 - -
Rops5g00540 1179 Pfam Protein of unknown function (DUF789) 822 1173 IPR008507 -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 170 228 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 170 187 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 352 372 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 423 445 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 504 538 - -
Rops5g00540 1179 MobiDBLite consensus disorder prediction 504 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00540 Rops-Chr5 8904025 8912219 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00540 - - aprc:113867773 1644.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00540 5 8904025 8912219 Rops5g00540 5 8904025 8912219 ECH