Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00348 ATGGCTGATGCATTTGATGAGCAGTGTGATTACCTCTTCAAGGCTGTTCTTATTGGAGACTCTGGAGTTGGGAAATCAAATCTGATCTCAAGGTTTGCAAAAGATGAATTCCTCCTTGATTCCAAGCCCACCATAGGTGTGGAATTTGCTTACAGGAACATCCAGGTCAGAGACAAACTCATCAAAGCACAGATATGGGATACTGCTGGACAAGAGAGGTTTAGAGCTATCACAAGCTCATACTACAGGGGAGCTTTAGGGGCAATGCTAGTGTATGACATAACAAGGAGATCAAGTTTTGTGAATGTAAGAAAATGGTTACATGAGCTGAGAGAGTTTGGAAGTGAAGACATGGTGATTATTCTGGTGGCAAACAAATCTGATTTGGTTCAATCAAGGGAAGTTGAGAAAGAAGAAGGAAAAGGGTTTGCTGAAAGAGAAGGATTATGTTTCATAGAAACATCTGCTTTGCAGAATCTAAATGTTGAGGAAGCATTCTTACAAATGATCACTAAGATCCATGATATCATAAGTCAGAAAAGTTTGGAAGCTAAAATGAATGGATCAACATTAAGTCTTCCAAATGGGAAGGAGATCAATATAGCTGATGAAGTGACTGCTACCAAACAAGTTAATTGTTGTTCAAGATGA 651 0.3902 MADAFDEQCDYLFKAVLIGDSGVGKSNLISRFAKDEFLLDSKPTIGVEFAYRNIQVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRRSSFVNVRKWLHELREFGSEDMVIILVANKSDLVQSREVEKEEGKGFAEREGLCFIETSALQNLNVEEAFLQMITKIHDIISQKSLEAKMNGSTLSLPNGKEINIADEVTATKQVNCCSR* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00348 216 SMART rab_sub_5 13 176 - -
Rops5g00348 216 FunFam ras-related protein RABA5a 5 214 - -
Rops5g00348 216 SMART ran_sub_2 18 208 - -
Rops5g00348 216 Gene3D - 5 214 IPR027417 -
Rops5g00348 216 ProSiteProfiles small GTPase Rab1 family profile. 8 214 - -
Rops5g00348 216 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Rops5g00348 216 NCBIfam small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Rops5g00348 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Rops5g00348 216 PRINTS Transforming protein P21 ras signature 151 173 - -
Rops5g00348 216 PRINTS Transforming protein P21 ras signature 13 34 - -
Rops5g00348 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Rops5g00348 216 PRINTS Transforming protein P21 ras signature 36 52 - -
Rops5g00348 216 PANTHER DRAB11-RELATED 7 214 - -
Rops5g00348 216 SMART ras_sub_4 10 176 - -
Rops5g00348 216 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Rops5g00348 216 CDD Rab11_like 10 174 - -
Rops5g00348 216 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Rops5g00348 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 187 IPR027417 -
Rops5g00348 216 ProSiteProfiles small GTPase Ras family profile. 7 202 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00348 Rops-Chr5 5814517 5818679 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00348 K07976 - gmx:100815793 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00348 5 5814517 5818679 Rops5g00348 5 5814517 5818679 ECH