Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00253 ATGGCTGCTAAAAGAATTTTCGATGATTTTGATCCAGACCCAGATAAGCCAAACGACAAACGGATGAGACCTACTAGACCTTCTTTAGCTTCGGTAATAGGAGAAGTGGTTATGGTTAAAAACTTGCAGAACTACCTTTTCTCAGCCTTGGAACCTTTGCTTAAAAGAGTGGTGGGTGAAGAGGTTGAGCGAGTGATGAGACAATGTTGTCCACGCTTCATTACTAGGTCTCCTTCATTGAGAATCCAAGCACCTGAACAACCATCAACCTTGCAACTCTCATTCAACAAAAGGCTTTCCCTCCCTATTTTCACAGGTAGCAGGATACTTGACATTGAAGGGAAGCCCATCAACATAATTCTAGTTGACAAAAGCAATGGCCAATGGGTTCCCACAAGCCTCCCTCATCCCATCAAGCTAGAGATTGTGGTTCTTGATGGAGATTTTCCACCAGATGATACTGAAGATTGGACTAGTGAGCAATTCAACAGCCACATAGTGAAGGAAAGAACAGGGAAGAGACCATTACTTGCAGGGGAATTGAACTTGACCATGAGGGATGGGATTGCACCAACTGGGGACATAGAGTTCACAGATAACTCTAGCTGGATAAGGAGCAGGAAGTTCAGAGTTGCAGTGAGAGTGACTAATAATAATCAAGGTGTTAGAATTCGAGAAGGCATGACTGAAGCATTTGTTGTCAAAGATCATCGTGGAGAATTGTACAAAAAACACCACCCACCAATGCTTCATGACAATGTATGGCGCCTAGAGAAGATTGGGAAAGATGGGGCTTTCCACAGAAAATTGTCCTCAGCGGGGATCAAATCAGTGCAAGACTTTCTCAAATTAGCAGTCATAGATACTGATAGGATCAGAGAGATTTTAGGCATTGGGATGTCAGACAAAATGTGGGAAGTGACAATCAAGCATGCAATGACTTGTGACATGGGGAGCAAGATCTATATATACCGTGGATCTCAATTTACTATTTTTCTGAATCCAATTTGCAAATTAATTAGAGCTGATATCAATGGACAAATATTTTCCAGCAGAGAGCTAAGCCAAATTAACAAGAGCTACATAGACAAATTGGTGAGAGAAGCATACAAAAAATGGCATACCTTGGAGGAAGTTGATGGAGTTTTGAATGATAACATTGCTTTGGTAACCCAAGGTGATCAAGCTGTGGAGCAATTTCCAAACAATAATCCAGCATCAGTAGTAACATATCATCATAACAATTATTATGATGACAAATCTACAGAGGTTGCTAGCTATGTACCAAGCAATAATGCACAAATGGGGTGCAGCGAGTGGTCACTGAATCTAGACTATACCACAGCATCTTTTGCAAATGACTTTCCTTATGGCTTCTCAGGGTCACAATCAAATGGTGACATTACCCCTTCAGGTTCATGCTCTGCGGACATTGATAGGGCCACAAGGCAACATTAG 1458 0.4163 MAAKRIFDDFDPDPDKPNDKRMRPTRPSLASVIGEVVMVKNLQNYLFSALEPLLKRVVGEEVERVMRQCCPRFITRSPSLRIQAPEQPSTLQLSFNKRLSLPIFTGSRILDIEGKPINIILVDKSNGQWVPTSLPHPIKLEIVVLDGDFPPDDTEDWTSEQFNSHIVKERTGKRPLLAGELNLTMRDGIAPTGDIEFTDNSSWIRSRKFRVAVRVTNNNQGVRIREGMTEAFVVKDHRGELYKKHHPPMLHDNVWRLEKIGKDGAFHRKLSSAGIKSVQDFLKLAVIDTDRIREILGIGMSDKMWEVTIKHAMTCDMGSKIYIYRGSQFTIFLNPICKLIRADINGQIFSSRELSQINKSYIDKLVREAYKKWHTLEEVDGVLNDNIALVTQGDQAVEQFPNNNPASVVTYHHNNYYDDKSTEVASYVPSNNAQMGCSEWSLNLDYTTASFANDFPYGFSGSQSNGDITPSGSCSADIDRATRQH* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00253 485 Pfam Calmodulin binding protein central domain 249 315 IPR046830 -
Rops5g00253 485 MobiDBLite consensus disorder prediction 1 26 - -
Rops5g00253 485 MobiDBLite consensus disorder prediction 1 23 - -
Rops5g00253 485 PANTHER OS02G0177800 PROTEIN 1 436 IPR012416 GO:0005516
Rops5g00253 485 Pfam Calmodulin binding protein-like N-terminal domain 91 237 IPR046831 -
Rops5g00253 485 MobiDBLite consensus disorder prediction 466 485 - -
Rops5g00253 485 Pfam Calmodulin binding protein C-terminal domain 320 379 IPR046829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00253 Rops-Chr5 3945996 3950193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00253 13 386 Calmodulin-binding Proteins AT4G25800 49.608 7.28e-119 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00253 - - gmx:100792405 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00253 5 3945996 3950193 Rops5g00253 5 3945996 3950193 ECH