Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00212 ATGGAAGAAGCTGATCAATCACCCCAGATCAAAGGTGTTGTTATAATTTCCCTTCCACCACCAGATAACCCCTCTTTAGGCAAAACCATCACTGCCATTACTTTCTCTAACCCTTCTTCTCCTCCATCTCAAGCTTCTCTGCAACCACATCAACAACAAACCCATCAGAATGATAATTATGCTCCTCAGTCATACCCTTCAAATCCTCAGCTTCAATTTTCATTCAGAAGAGTCTTCTTCAACACCCCAATGAAGCTCTTCTCTTTCTTTGGTATTATTCTCTTTGCCCTTTGTCTTTATGGTTCTGTTTTTTCAACTACCACCCTGGAACTACGTGGTCCCAAGGATGATGATGATGGACCCAGTTCTTTCCTCTTCCCTCTGTTTCCAAAATATGGTATTTTTGGACAGAAGGATGTGAAGCTTAAACTGGGGAAGCTTCAAAAAGAGAACTTTGTGACCAAAGGGAACGCTGGTGTTGCTTCTAGTTCTAAAGTTATAGCCGTTGACTCTTCCTCTCCCGTTTTTCCAATCAGTGGCAACGTTTATCCAGAAGGGTTGTATTTCACACATTTACGAATTGGAAATCCTCCAAAACATTATTTTCTTGATGTGGATACAGGGAGTGACTTAACTTGGATTCAGTGTGATGCTCCATGCAAAAGTTGTGCGAAGGGAGCACATGTCCTGTACAAGCCAACAAGATCCAATATAGTGCCATCTGTTGACTCTCTCTGCTTGGAAGTTCAGAAAAATCAGAGGAATGGATATCATGGAAGTCTCCAACAGTGTGATTATGAAATTCAATATGCAGATCATAGTTCTTCCTTAGGGGTTCTTATTAGAGATGACCTTCATCTTGTGACTACTAACGGATCCGAAACCAAGTTAAAGTTTGTTTTTGGGTGTGGATATGATCAAGAGGGTTTACTTTTGAACACATTGGCAAAAACAGATGGAATCATGGGACTAAGCAGGGCAAAAGTAAGCCTACCTTACCAGTTGGCAAGTAGAGGGCTTATTAAGAACGTGGTTGGTCATTGCCTAAGCAATGATGGAGTTGGTGGTGGATACATGTTCTTGGGTGATGATTTTGTGCCATATTGGGGTATGACTTGGGCATCCATGGCCTATACCCATACAACAGATTTATACCAAAGTGAGATTCTTGGAATAAATTATGGAAGTCAGCCACTCAGTTTTGATGGCCACAGCAAAGTAGGAAAGGTGGTTTTTGATAGTGGCAGTTCCTATACGTATTTTACAAAAGAGGCATACTCGGATCTTGTTGCTTCTCTTAAAGATGTTTCTGGATTGGGGCTCATTCAAGATGATTCAGATACAACTTTACCCATTTGCTGGCAAGCTAATTTCCCAATCAGATCTGTCAAAGATGTCAAGCGTTTCTTCAAGACCTTAACTCTTCGATTTGGAAGCAAGTGGTGGATTTTGTCCACAATGTTTCAGATACCTCCGGAGGGTTACTTGATCATTAGTAACAAAGGCAATGTGTGCTTAGCTATCCTTGATGGTAGCAATGTAAATGATGGATCCTCAATTATACTTGGAGATGTGTCATTGCGAGGATATTTGGTTGTGTATGACAATGCTAACCAAAGAATAGGTTGGGAGAGAGCAGACTGTGACATACCAAGCAGAAGATTGAGAAATACTAACAAATTCTTCCCTGATAGCATGTTATAA 1704 0.4079 MEEADQSPQIKGVVIISLPPPDNPSLGKTITAITFSNPSSPPSQASLQPHQQQTHQNDNYAPQSYPSNPQLQFSFRRVFFNTPMKLFSFFGIILFALCLYGSVFSTTTLELRGPKDDDDGPSSFLFPLFPKYGIFGQKDVKLKLGKLQKENFVTKGNAGVASSSKVIAVDSSSPVFPISGNVYPEGLYFTHLRIGNPPKHYFLDVDTGSDLTWIQCDAPCKSCAKGAHVLYKPTRSNIVPSVDSLCLEVQKNQRNGYHGSLQQCDYEIQYADHSSSLGVLIRDDLHLVTTNGSETKLKFVFGCGYDQEGLLLNTLAKTDGIMGLSRAKVSLPYQLASRGLIKNVVGHCLSNDGVGGGYMFLGDDFVPYWGMTWASMAYTHTTDLYQSEILGINYGSQPLSFDGHSKVGKVVFDSGSSYTYFTKEAYSDLVASLKDVSGLGLIQDDSDTTLPICWQANFPIRSVKDVKRFFKTLTLRFGSKWWILSTMFQIPPEGYLIISNKGNVCLAILDGSNVNDGSSIILGDVSLRGYLVVYDNANQRIGWERADCDIPSRRLRNTNKFFPDSML* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00212 567 Gene3D Acid Proteases 370 549 IPR021109 -
Rops5g00212 567 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 410 421 IPR001969 GO:0004190|GO:0006508
Rops5g00212 567 PANTHER ASPARTYL PROTEASES 108 542 IPR001461 GO:0004190|GO:0006508
Rops5g00212 567 PRINTS Pepsin (A1) aspartic protease family signature 194 214 IPR001461 GO:0004190|GO:0006508
Rops5g00212 567 PRINTS Pepsin (A1) aspartic protease family signature 410 421 IPR001461 GO:0004190|GO:0006508
Rops5g00212 567 PRINTS Pepsin (A1) aspartic protease family signature 520 535 IPR001461 GO:0004190|GO:0006508
Rops5g00212 567 SUPERFAMILY Acid proteases 180 549 IPR021109 -
Rops5g00212 567 FunFam Aspartyl protease APCB1 368 554 - -
Rops5g00212 567 MobiDBLite consensus disorder prediction 1 63 - -
Rops5g00212 567 ProSiteProfiles Peptidase family A1 domain profile. 188 544 IPR033121 -
Rops5g00212 567 MobiDBLite consensus disorder prediction 27 63 - -
Rops5g00212 567 Pfam Xylanase inhibitor C-terminal 398 544 IPR032799 -
Rops5g00212 567 Pfam Xylanase inhibitor N-terminal 188 363 IPR032861 -
Rops5g00212 567 FunFam Aspartyl protease family protein 164 363 - -
Rops5g00212 567 Gene3D Acid Proteases 163 363 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00212 Rops-Chr5 3372166 3377174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00212 171 549 Miscellaneous Gene Families AT1G77480 46.053 2.44e-112 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00212 - - gmx:100810687 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00212 5 3372166 3377174 Rops5g00212 5 3372166 3377174 ECH