Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g00198 ATGGCTCTGAACTTGTCTCCACCATTTGTTGCTCTCACCTTTGCATTTTGCATCACAATACTTTCCATTCTTCAATCTTCCACTTCCTCTAGAATCACACCATCACAATCTTCTTCTGAGTTCACCACCAATGTTCTTGACATCTCTTCCACACTCCACAAAGTTCTCAACTTTAACCATGAACTTCTAGAACCTTCTCATGTGCAAGAAACCCAAATCACCTCAAATTCCTCTTCTTTCTTCTCCGTCCAATTACACCCAAGAGAGTCCCTCCTCCTCAAAGAGAAAAACCACCATGACTACAAGACCCGGGTCATGGCCCGACTCGCCCGTGACTCAGCCCGAGTCAACTCACTCAACACAAAACTCCAACTCGCCCTCAACAACTTGAAAAAATCGGATCTTTACCCGACCCAGGTGGAGATCCTACCCGAGGATCTCTCCACGCCGGTTTCCTCCGGCATCGGCCAAGGTAGCGGCGAGTATTTCACACGGGTCGGTGTGGGTCAACCCACTAAACCCTTCTACATGGTTCTAGACACTGGTAGCGACGTTAACTGGCTCCAATGCAAACCATGCTCCGATTGTTACCAACAATCCGACCCGGTTTTCGACCCGACATCATCATCTTCGTACGGACCGTTAACCTGCGACGCGCAACAGTGTCAGGCGTTGGAAGTTTCGGCGTGCCGTAACGGAAAGTGTCTCTATCAGGTTTCTTATGGCGACGGTTCTTTCACCGTCGGTGAATATGTAACTGAAACGGTGTCGTTTGGTGAATCCGGGTCGATTAACCGGGTCGCCATTGGTTGTGGCCACGATAATGAAGGTTTGTTCGTCGGAGCCGCAGGGTTGCTTGGACTCGGAGGTGGGCCCCTCTCATTAACCTCGCAGATCAAAGCGACGTCGTTTTCTTACTGCCTCGTTGATCGTGACTCGGGAAAATCGTCGACTCTTGAGTTTAACTCGCCGCGACCCGGTGACTCAGTCACTGCCCGGTTGCTAAAAAACCAAAAGCTCGACACTTTCTACTACGTTGAGCTCACCGGAGTTAGCGTCGGCGGTGAGAGGGTGGCCATTCCGCCGGAGACATTCGTGATGGACACTTCCGGCGCTGGAGGGATCATAGTTGACTCGGGAACCGCCATAACTCGGTTGAGAACTCAGGCTTATAACTCGGTCCGTGACTCGTTCAAGAAACTCACTCAGAATCTGCGTTCAGCTGAAGGTGTTGCGCTTTTTGACACATGCTACGACTTGTCGTCTTTGCAATCTGTTCGTGTCCCAACGGTATCGTTTCACTTTAGTGGTGACAAAACGTGGTCGTTGCTGGCGAAGAATTACCTCATTCCGGTGGACAACACCGGAACTTTTTGCTTTGCGTTTGCTCCGACATCATCGTCGTTGTCCATTATTGGGAATGTGCAACAACAAGGGACACGTGTCAGCTTTGATCTTGCAAACTCTTTAATGGGATTCTCACCCAACAAGTGCTAG 1497 0.5017 MALNLSPPFVALTFAFCITILSILQSSTSSRITPSQSSSEFTTNVLDISSTLHKVLNFNHELLEPSHVQETQITSNSSSFFSVQLHPRESLLLKEKNHHDYKTRVMARLARDSARVNSLNTKLQLALNNLKKSDLYPTQVEILPEDLSTPVSSGIGQGSGEYFTRVGVGQPTKPFYMVLDTGSDVNWLQCKPCSDCYQQSDPVFDPTSSSSYGPLTCDAQQCQALEVSACRNGKCLYQVSYGDGSFTVGEYVTETVSFGESGSINRVAIGCGHDNEGLFVGAAGLLGLGGGPLSLTSQIKATSFSYCLVDRDSGKSSTLEFNSPRPGDSVTARLLKNQKLDTFYYVELTGVSVGGERVAIPPETFVMDTSGAGGIIVDSGTAITRLRTQAYNSVRDSFKKLTQNLRSAEGVALFDTCYDLSSLQSVRVPTVSFHFSGDKTWSLLAKNYLIPVDNTGTFCFAFAPTSSSLSIIGNVQQQGTRVSFDLANSLMGFSPNKC* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g00198 498 PANTHER ASPARTYL PROTEASES 44 492 IPR001461 GO:0004190|GO:0006508
Rops5g00198 498 Gene3D Acid Proteases 138 321 IPR021109 -
Rops5g00198 498 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 177 188 IPR001969 GO:0004190|GO:0006508
Rops5g00198 498 ProSiteProfiles Peptidase family A1 domain profile. 162 494 IPR033121 -
Rops5g00198 498 Pfam Xylanase inhibitor N-terminal 162 321 IPR032861 -
Rops5g00198 498 SUPERFAMILY Acid proteases 156 498 IPR021109 -
Rops5g00198 498 Pfam Xylanase inhibitor C-terminal 344 494 IPR032799 -
Rops5g00198 498 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 375 386 IPR001969 GO:0004190|GO:0006508
Rops5g00198 498 Gene3D Acid Proteases 326 498 IPR021109 -
Rops5g00198 498 FunFam aspartyl protease family protein 2 139 321 - -
Rops5g00198 498 FunFam Aspartyl protease family protein 2 322 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g00198 Rops-Chr5 3044162 3046187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g00198 160 498 Miscellaneous Gene Families AT1G77480 26.509 5.63e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g00198 K22683 - gmx:100784849 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00198 5 3044162 3046187 Rops5g00198 5 3044162 3046187 ECH