Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02425 ATGGGGGATGAAGGCCCAAGCTACACTGTAGATGATGCTCTTGTGGCTTTGGGTTTTGGAAAATTCCAAATTCTTGTGCTAGCATATGCTGGCCTTGGTTGGATTTCAGAAGCAATGGAAATGATGCTACTCTCCTTTGTAGGCCCTGCAGTACAATCTGCATGGAGTCTTTCCCCTCATAAAGAGAGCTTAATAAGCAGTGTGGTTTTTGCTGGCATGTTAATTGGGGCATACTCATGGGGCATTGTTTCAGATAAACATGGAAGGAGGAAAGGATTCCTTATCACAGCAACAGTTACTGCTATGGCTGGTTTTCTGAGTGCATTTGCTCCTAACTATACATTATTAATTGCCCTTCGTTCTCTGGTTGGTCTTGGTTTGGGAGGTGGCCCTGTATTATCATCTTGGTTTCTTGAGTTTGTTCCAGCCCCCAATAGAGGTACCTGGATGGTTGTATTTTCAGCATTTTGGACTCTCGGTACAATTTTTGAGGCATCACTTGCATGGATCGTGATGCCAAAACTGGGCTGGAGATGGCTTCTTGCACTATCTTCCCTTCCCACATCTTTCCTTCTCCTGTTCTACAAAGTGACACCTGAGTCACCAAGATACCTATGCTTGAAAGGTAGAACAACTGATGCAATTAATGTTTTGGAGAAAATAGCAAGAGTAAATGGAAGAAAACTGCCTTCTGGTATCCTTGTTTCTGACCATCAAATTGAGCTACACAAGATTGAAAACCCTTCAGAGGACACAAGTTTACTCTCACCAAGAAAAAATGAAGTTGAACCTCCTAAGGGAATGTTTTCCAATTTAGGTGGTATCTCATCACTTGTAATGCTTCTCTCACCAAAATTGGCAAGGTCAACCCTTCTATTATGGGCAGTGTTCTTTGGTAATGCTTTTTCATATTATGGCCTTGTTTTGTTGACCTCTGAGTTGAACGGACATAGTGAATGCCTGCCACATAAATTGCACCCAGAGAAGTCCCAGGACATTAGATACAAAGATGTTTTCATTGCTAGTTTTGCAGAGCTACCTGGGCTCCTCTTGTCAGCCGCAGCAGTAGATAAACTCGGTCGCAAGCTCTCAATGTCAATCATGTTCTTCATGTGTTGTATTTTCCTTCTCCCATTAATATTCTATCTGCCTGAAGGCCTAACAACGAGCCTTTTGTTTGGAGCTCGCACATGCATCACAGCAACCTTCACAATTATGTATATATATGCACCAGAGATATACCCAACATCAATCAGAACAACTGGTGTCGGAATTGCAAGCTCAGTGGGCAGAATTGGTGGAATGATATGTCCCTTGGTAGCAGTGGGTTTAGTACATGGTTGTCATCAAACTGCGGCTGTCATTCTGTTTGAAATCGTAGCCCTTCTTTCAGGAATATGTGTTATGTTCTTTCCGGTTGAGACCATGGGCCAAGAACTGCAAGATAGTTTGTCAAGTCCAAAACAGACCAACAACACATAA 1482 0.4265 MGDEGPSYTVDDALVALGFGKFQILVLAYAGLGWISEAMEMMLLSFVGPAVQSAWSLSPHKESLISSVVFAGMLIGAYSWGIVSDKHGRRKGFLITATVTAMAGFLSAFAPNYTLLIALRSLVGLGLGGGPVLSSWFLEFVPAPNRGTWMVVFSAFWTLGTIFEASLAWIVMPKLGWRWLLALSSLPTSFLLLFYKVTPESPRYLCLKGRTTDAINVLEKIARVNGRKLPSGILVSDHQIELHKIENPSEDTSLLSPRKNEVEPPKGMFSNLGGISSLVMLLSPKLARSTLLLWAVFFGNAFSYYGLVLLTSELNGHSECLPHKLHPEKSQDIRYKDVFIASFAELPGLLLSAAAVDKLGRKLSMSIMFFMCCIFLLPLIFYLPEGLTTSLLFGARTCITATFTIMYIYAPEIYPTSIRTTGVGIASSVGRIGGMICPLVAVGLVHGCHQTAAVILFEIVALLSGICVMFFPVETMGQELQDSLSSPKQTNNT* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02425 493 Pfam Major Facilitator Superfamily 340 472 IPR011701 GO:0022857|GO:0055085
Rops4g02425 493 Gene3D MFS general substrate transporter like domains 20 483 IPR036259 -
Rops4g02425 493 PANTHER SYNAPTIC VESICLE GLYCOPROTEIN 2 7 478 - -
Rops4g02425 493 Pfam Sugar (and other) transporter 61 225 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops4g02425 493 FunFam Organic cation/carnitine transporter 7 21 477 - -
Rops4g02425 493 SUPERFAMILY MFS general substrate transporter 10 481 IPR036259 -
Rops4g02425 493 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 476 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02425 Rops-Chr4 51418624 51428167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02425 48 484 Organic Solute Cotransporters AT3G20660 25.991 3.36e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02425 - - tpra:123924577 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02425 4 51418624 51428167 Rops4g02425 4 51418624 51428167 ECH