Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02396 ATGCTTAGTAAGAGTAAAACGTTGGGTTCTGCTGGGGTGTCATCTGTTCAGCCTGCTAGCAATCCTCCCAGGACTGTTTCAACATTAAATTCCACACCTGCTCCTGAACCTGCAATTCAAACTCAGACGGCCAACAACAGTAAATCTGGCACAGATGCCACAACTACAAATATGTCTGCAGATACCTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAACCTTGAACAGACTATTCAACAAATTATGGACATGGGCGGTGGCAACTGGGACAGAGATACAGTTAGTCGTGCTCTTCGGGCAGCTTATAATAACCCAGAGCGTGCTATAGATTACTTGTATTCTACAACTGAAACAGCTGGGTTCTCTGCTGGAGCTGTTCCAGGAGCTCCTAAATCATCTCCGTTAAATATGTTTCCACAGGAGGCGATTTCTGGTACTGGTGCTGGACTTGGATCTCTTGACTTCCTTAGAAACAATCCCCAGTTTCAAGCATTACAGTCAATGGTGCAATCCAATCCACAAATTCTACAGCCTGTGCTTCAGGAACTCGGTAAGCAGAATCCCAATCTTTTAAGACTGATTCAGGAGCATCATGCAGAGCTTCTCCAGTTGATAAATGAACCCTTTGAGGGTTCTGAAGAAGGAGATATATTTGAGCAGCCTGAGCAAGACATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATCGGCAGGCTTCAAGCTATGGGATTTGATAGGGCCTCAGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTATTGGAGAATGCTGGAGATTATGAGGAATAA 846 0.4527 MLSKSKTLGSAGVSSVQPASNPPRTVSTLNSTPAPEPAIQTQTANNSKSGTDATTTNMSADTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVSRALRAAYNNPERAIDYLYSTTETAGFSAGAVPGAPKSSPLNMFPQEAISGTGAGLGSLDFLRNNPQFQALQSMVQSNPQILQPVLQELGKQNPNLLRLIQEHHAELLQLINEPFEGSEEGDIFEQPEQDMPHAINVTPAEQEAIGRLQAMGFDRASVIEAFLACDRDEQLAANYLLENAGDYEE* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02396 281 FunFam UV excision repair protein RAD23 B 145 211 - -
Rops4g02396 281 SMART uba_6 76 116 IPR015940 -
Rops4g02396 281 SMART uba_6 237 274 IPR015940 -
Rops4g02396 281 PRINTS DNA repair protein Rad23 signature 231 247 IPR004806 GO:0006289
Rops4g02396 281 PRINTS DNA repair protein Rad23 signature 248 262 IPR004806 GO:0006289
Rops4g02396 281 PRINTS DNA repair protein Rad23 signature 181 203 IPR004806 GO:0006289
Rops4g02396 281 PRINTS DNA repair protein Rad23 signature 263 278 IPR004806 GO:0006289
Rops4g02396 281 SUPERFAMILY UBA-like 216 278 IPR009060 GO:0005515
Rops4g02396 281 Gene3D - 228 276 - -
Rops4g02396 281 Gene3D - 145 210 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops4g02396 281 FunFam UV excision repair protein RAD23 homolog 69 119 - -
Rops4g02396 281 PANTHER UV EXCISION REPAIR PROTEIN RAD23 20 270 - -
Rops4g02396 281 FunFam UV excision repair protein RAD23 homolog 228 276 - -
Rops4g02396 281 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 235 275 IPR015940 -
Rops4g02396 281 NCBIfam UV excision repair protein Rad23 1 279 IPR004806 GO:0006289
Rops4g02396 281 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 74 117 IPR015940 -
Rops4g02396 281 MobiDBLite consensus disorder prediction 1 58 - -
Rops4g02396 281 SMART CBM 153 196 IPR006636 -
Rops4g02396 281 Pfam UBA/TS-N domain 76 114 IPR015940 -
Rops4g02396 281 Pfam UBA/TS-N domain 237 272 IPR015940 -
Rops4g02396 281 Gene3D - 69 117 - -
Rops4g02396 281 Pfam XPC-binding domain 155 210 IPR015360 GO:0003684|GO:0006289|GO:0043161
Rops4g02396 281 SUPERFAMILY XPC-binding domain 152 215 IPR036353 GO:0003684|GO:0006289|GO:0043161
Rops4g02396 281 SUPERFAMILY UBA-like 73 119 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02396 Rops-Chr4 51062076 51068091 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02396 K10839 - gmx:100819019 474.552