Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02389 ATGTCTCCAAGAAGCAACAACAAATCATCATCAAGAAAAATGGGGGGAGCCATAAGCATTGGCTTGACGTTGTTGATATTTTTCAGCACAATCCTTGGCTGCGCCGCCGAACGACATGAATCTCAGTCTCGGGAACAGCAAGAGCCGAGTTACCTGAAGATGGTGGTGAACGCGAGCGAGCTTCCACCGGAAGATTACTACGATTATATCATCGTGGGTGGCGGAACCGCGGGATGCCCTTTGGCGGCGACGCTGTCGCAGGGGTTTAAGGTGCTGTTGCTTGAACGAGGAGGTGTTGGTCATGGGAATGCCAACTTGATGAACCAAGAAGGGTTCTTGACCACACTGTTGAACGCCAACGCCAGGGATGACTCTCCCGCGCAATCTTTCACTTCCGAAGAGGGCGTGGCCAATGCTCGTGGTCGAGTTCTTGGTGGCAGTAGCGCCATCAATGCAGGGTTCTACAGCAGAGCCGATCATGATTTCTTCACCAGGTCTGGCTTGCACTGGGACATGAAGCTTGTCAACGAATCGTATGAATGGGTTGAGAGAGAAATCGTGTTCAGGCCTCAACTCAAGACTTGGCAATCCGCTTTTCGTGATGGGTTGCTTGAGGCAGGGGTTGGTCCCTACAATGGCTTCACTTTGGAACATGCGACTGGCACCAAGATTGGTGGCTCCACCTTTGACGCCGCCGGAAGAAGACACAGCTCCGCCGATCTTTTGAGATATGCCAGGCCTTCCAATCTCAAGGTGGCTGTCCATGCAAGCGTGGAAAGGCTGCTTCTTGCAGCTTCTCCTTCCACTTCCACTTCTGCCTTTGGTGTGCTTTACCGTGACGAAATGGGAAGGTTTCACCATGCAATGTTGAGGTACCATGGTGAGGTTATTCTCTCCGCTGGTGCCATTGGGAGTCCTCAACTTCTGCTTCTCAGTGGGGTAGGTCCAAGGCCTTATCTTTCTTCATGGGGAATTCCAGTTGCTCACCACCTTCCCTATGTGGGTCATTTCCTATATGACAATCCTCGCAATGGTATCACCATTCTCCCTTCACTTCCTCTTGAACATTCACTCATACAAGTCGTGGGCATCACTGATTCTGGGACTTACATCGAAGCTGCATCCAATGTGGTTCCTTTTGCATCCCCTCGCCAAACTGTCTTCATCCGCAGCCCTTCTTCCCCACTCTACCTCACCGTGGCAACACTTTTTTCCAAGATTTCAGGGCCTGTCTCCGCTGGTTTTCTCAGACTGGCTTCCACCGATGTCAGGTTCAATCCCATTGTCAGGTTCAACTATTTCAACAGCCCAGTGGATGTTCAACGATGCGTCAATGGCACAAGAAAGATTGGGGATGTACTCAGGAGCAGGGCCATGAATGATTTCAAATTCAGGAGCTGGTTAGGGGGCCACGAATTTAGATTTATAGGCCCTGCATTGCCTTCTGATCAATCGGACTACCTTGAGGTGGCTGATTTCTGCCGCAGGACGGTGAGCACCATATGGCACTACCATGGAGGCTGCGTCGTGGGCAGGGTGGTTGATCCTCATCTTAAGGTCCTTGGAATTGATTCACTTCGAGTTGTGGATGGTTCAGTGTTTAGTGTTTCTCCTGGAACCAATCCTCAGGCCACCCTGATGATGCTGGGACGGTAA 1656 0.5115 MSPRSNNKSSSRKMGGAISIGLTLLIFFSTILGCAAERHESQSREQQEPSYLKMVVNASELPPEDYYDYIIVGGGTAGCPLAATLSQGFKVLLLERGGVGHGNANLMNQEGFLTTLLNANARDDSPAQSFTSEEGVANARGRVLGGSSAINAGFYSRADHDFFTRSGLHWDMKLVNESYEWVEREIVFRPQLKTWQSAFRDGLLEAGVGPYNGFTLEHATGTKIGGSTFDAAGRRHSSADLLRYARPSNLKVAVHASVERLLLAASPSTSTSAFGVLYRDEMGRFHHAMLRYHGEVILSAGAIGSPQLLLLSGVGPRPYLSSWGIPVAHHLPYVGHFLYDNPRNGITILPSLPLEHSLIQVVGITDSGTYIEAASNVVPFASPRQTVFIRSPSSPLYLTVATLFSKISGPVSAGFLRLASTDVRFNPIVRFNYFNSPVDVQRCVNGTRKIGDVLRSRAMNDFKFRSWLGGHEFRFIGPALPSDQSDYLEVADFCRRTVSTIWHYHGGCVVGRVVDPHLKVLGIDSLRVVDGSVFSVSPGTNPQATLMMLGR* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02389 551 Gene3D - 67 550 IPR036188 -
Rops4g02389 551 SUPERFAMILY FAD/NAD(P)-binding domain 51 360 IPR036188 -
Rops4g02389 551 PIRSF Alcohol_oxidase 365 551 IPR012132 GO:0050660
Rops4g02389 551 PIRSF Alcohol_oxidase 43 375 IPR012132 GO:0050660
Rops4g02389 551 Pfam GMC oxidoreductase 67 341 IPR000172 GO:0016614|GO:0050660
Rops4g02389 551 PANTHER OSJNBA0019K04.7 PROTEIN 33 551 - -
Rops4g02389 551 Gene3D - 188 500 - -
Rops4g02389 551 Pfam GMC oxidoreductase 410 550 IPR007867 GO:0016614
Rops4g02389 551 SUPERFAMILY FAD-linked reductases, C-terminal domain 338 507 - -
Rops4g02389 551 ProSitePatterns GMC oxidoreductases signature 2. 301 315 IPR000172 GO:0016614|GO:0050660
Rops4g02389 551 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02389 Rops-Chr4 50963468 50965218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02389 20 551 Miscellaneous Gene Families AT5G51950 45.359 1.46e-149 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02389 K08248 - gmx:100820069 820.076