Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02268 ATGTCGTCTCTGAGTAGGGAATTGGTGTTCTTGATCTTGCAGTTTCTCGATGAGGAAAAGTTCAAAGAGACTGTTCACAAGCTGGAGCAGGAATCTGGGTTTTTCTTTAACATGAAATATTTTGAGGATGAAGTGCATAATGGGAATTGGGATGAGGTTGAAAAGTACCTATCTGGTTTCACAAAAGTAGATGATAATAGGTATTCTATGAAGATATTTTTTGAGATAAGGAAGCAGAAGTATCTGGAGGCATTAGATAAGCATGACCGTTCCAAGGCTGTAGAAATATTAGTGAAGGATTTGAAAGTGTTTGCTACATTTAATGAAGAACTGTTCAAGGAAATCACACAGCTTTTGACATTGGAGAATTTTAGGGAAAATGAACAGTTGTCTAAGTATGGTGATACAAAGTCTGCACGAGCAATCATGTTGGTTGAGCTCAAAAAGCTCATTGAAGCAAATCCCTTATTTCGTGACAAATTGCAATTTCCCAACCTTAAAAATTCAAGGTTACGGACTCTCATCAATCAAAGCTTGAATTGGCAACATCAACTTTGCAAGAATCCACGTCCAAATCCTGATATAAAAACTCTCTTTGTGGATCACTCATGTGGACAACCCAATGGTGCACGAGCTCCTTCACCTGCTAACAATCCTCTTCTAGGATCCTTACCAAAGGCTGGGGGATTTCCTCCTCTTGGTGCTCATGGGCCTTTTCAACCTGCTCCGACACCAGTGCCAACACCCCTGGCTGGTTGGATGTCAAATCCTACCACTGTAGCACATGCTGCAGTTTCTGGAGGAGGAGCTATAGGTCTTGGTGCTCCATCAATACCTGCTGCTTTGAAGCACCCCAGGACCCCTCCAACAAATCCTTCTGTTGACTATCCATCTGGAGACTCAGATCACGTTGCTAAGAGAACAAGGCCGATGGGAATTTCAGATGAGGTAAATCTACCTGTCAATGTTTTGTCAGCAACATTCCCAGGTCATGGTCATGGTCAGGCTTTTAATGCACCTGATGACTTGCCGAAGACTGTCATGCGAACTCTAAATCAGGGTTCATCTCCTATGAGCATGGACTTTCATCCAGTTCAACAATCTTTACTTCTTGTCGGTACAAATGTGGGGGACATTGCTTTGTGGGAAGTGGGTTCTAGGGAGCGGTTGGTCTCAAGGAACTTCAAAGTTTGGGATCTTAGTGCATGTTCAATGCCATTTCAGGCTGCTCTTGTCAAAGATCCCGGTGTTTCTGTTAACCGTGTGATTTGGAGTCCTCCTGATGGTGCTTTATTTGGAGTTGCTTACTCAAGGCACATTGTTCAGATATACTCTTACCATGGTGGGGATGAAGTACGACAGCACTTGGAGATTGATGCTCATGTTGGTGGAGTAAATGATCTAGCATTTTCCCATCCAAACAAGCAACTGTGTGTGATAACCTGTGGTGATGATAAGACCATTAAGGTGTGGGATGCTGCTTCGGGTACGAAGCAATATACTTTTGAAGGTCATGAGGCTCCAGTTTATTCTGTCTGCCCACATTATAAAGAAAACATTCAGTTCATCTTTTCAACAGCATTAGACGGAAAAATAAAAGCATGGTTGTATGACAATTTGGGATCTCGTGTTGATTATGATGCTCCTGGTCGATGGTGCACAACCATGGCTTATAGTGCTGATGGTACAAGGCTCTTTTCATGTGGGACAAGCAAAGATGGGGAGTCCTCTATTGTGGAGTGGAATGAAAGTGAAGGAGCTGTGAAAAGGACTTATCAAGGGTTCCGTAAGCGATCTATGGGTGTTGTGCAATTTGATACCACCAAAAATCGATTTTTGGCTGCTGGTGATGATTTCTCTATTAAATTCTGGGATATGGACAATGTTCAGCTTTTGACAACTGTGGATGCTGATGGGGGTCTCCCTGCAAGCCCACGTATTCGGTTCAACAAGGATGGAACTCTTTTAGCTGTCTCCGCTAATGAGAATGGCATTAAAATCTTAGCCAATGGAGATGGTATTCGTTTATTGCGTACCCTAGAGAATTCTTTATATGATGCATCAAGAGCATCAGAAACCTTGGCAAAGCCTACAATAAATCCAATTTCTGCTGCTGCCGCAGCTGCAACTAGTGCTGCACTTGCAGAGAGGGCCTCATCTGTAGTAGCTATTGCTGGAATGAATGGGGATGCCCGAAACTTGGGTGATGTTAAACCTAGAATAAGTGAAGAATCCAATGACAAGTCGAAGATATGGAAGCTCACTGAACTCAATGACCCATCTCATTGTCGATCCTTGAAGCTACCGGAGAATGTAAGAGTAACCAAGATATCGAGGTTGATATATACAAATTCAGGTAATGCTATTCTGGCATTAGCATCAAATGCCATTCACCTGCTCTGGAAATGGCAGAGAAATGACCGTAACTCATCTGGCAAGGCCACCGCCACCATGCAACCTCAGTTGTGGCAACCGTCAAGTGGCATCCTGATGACTAATGACATTGCTGATAGCAATCCTGAGGATGCTGTTCCCTGCTTTGCTCTGTCCAAAAATGATTCATATGTAATGTCTGCATCAGGAGGGAAGATATCCTTGTTCAATATGATGACTTTTAAGACGATGACAACTTTCATGCCTCCACCACCTGCAGCAACCTTTCTTGCTTTCCATCCTCAGGATAATAATATAATTGCTATAGGCATGGATGATTCTTCCATTCAGATATATAATGTCCGTGTTGATGAGGTTAAAAGTAAACTCAAAGGCCATACGAAAAGAATAACTGGTCTTGCTTTCTCTCATGTATTGAATGTTCTAGTTTCATCTGGGGCGGATGCTCAGATTTGTGTGTGGAATACTGATGGATGGGAAAAACAGAAGACTAGATTCTTGCAGCTTCCTCCTGGGAGGACTCCACCAGCACAATCAGATACCCGAGTACAGTTTCATCAGGATCAGATACAGTTCTTGGTTGTACATGAAACTCAGCTTGCCATTTATGAAGCAACAAAACTAGAAGGTCTAAAGCAGTGGTTCCCTCGAGATTCTGCTGTACCTATATCGCATGCAACTTTCTCATGTGATAGTCAGCTGATATATGCCAGCTTTTTAGATGCAACAATCTGTGTATTTAGTGCTTCAAACCTTAGATTACGTTGTCGTATCAGTCCTTCTGCTTATCTTCCTGCAAGTGTCAGCAGTTCCAATGTACAACCGCTTGTGATTGCTGCACATCCACAAGAACCAAATCAATTTGCTGTGGGACTGTCAGATGGTGGAGTTCATGTCTTTGAGCCCCTTGAGTCAGAAGGCAAGTGGGGTGTGCCTCCTCCTATTGAGAATGGGTCAGCAAGCAATGTGGCAGCTACTTCAGTTGGTGGACCTTCTTCAGATCAAGCTCAAAGATGA 3411 0.431 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPAPTPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGHGQAFNAPDDLPKTVMRTLNQGSSPMSMDFHPVQQSLLLVGTNVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGTKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSMGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYDASRASETLAKPTINPISAAAAAATSAALAERASSVVAIAGMNGDARNLGDVKPRISEESNDKSKIWKLTELNDPSHCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATATMQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSAVPISHATFSCDSQLIYASFLDATICVFSASNLRLRCRISPSAYLPASVSSSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAATSVGGPSSDQAQR* 1137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02268 1136 SUPERFAMILY Nucleoporin domain 980 1105 - -
Rops4g02268 1136 Gene3D - 550 738 IPR015943 GO:0005515
Rops4g02268 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 921 962 IPR001680 GO:0005515
Rops4g02268 1136 SMART Lish 4 36 IPR006594 GO:0005515
Rops4g02268 1136 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Rops4g02268 1136 MobiDBLite consensus disorder prediction 1106 1136 - -
Rops4g02268 1136 Gene3D - 326 549 IPR015943 GO:0005515
Rops4g02268 1136 Gene3D - 811 1100 IPR015943 GO:0005515
Rops4g02268 1136 FunFam Topless-related protein 1 324 543 - -
Rops4g02268 1136 SUPERFAMILY WD40 repeat-like 418 956 IPR036322 GO:0005515
Rops4g02268 1136 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 921 953 - -
Rops4g02268 1136 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Rops4g02268 1136 SMART WD40_4 1006 1046 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 451 492 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 871 911 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 495 536 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 539 582 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 585 625 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 914 953 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 831 868 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 344 383 IPR001680 GO:0005515
Rops4g02268 1136 SMART WD40_4 1059 1099 IPR001680 GO:0005515
Rops4g02268 1136 FunFam Topless-related protein 3 740 975 - -
Rops4g02268 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 634 IPR001680 GO:0005515
Rops4g02268 1136 MobiDBLite consensus disorder prediction 1117 1136 - -
Rops4g02268 1136 SMART ctlh 34 92 IPR006595 -
Rops4g02268 1136 Pfam WD domain, G-beta repeat 920 953 IPR001680 GO:0005515
Rops4g02268 1136 Pfam WD domain, G-beta repeat 458 492 IPR001680 GO:0005515
Rops4g02268 1136 ProSiteProfiles Trp-Asp (WD) repeats profile. 458 501 IPR001680 GO:0005515
Rops4g02268 1136 ProSitePatterns Trp-Asp (WD) repeats signature. 479 493 IPR019775 -
Rops4g02268 1136 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1117 IPR027728 GO:0006355
Rops4g02268 1136 SUPERFAMILY WD40 repeat-like 346 452 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02268 Rops-Chr4 49417847 49425448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02268 456 669 Miscellaneous Gene Families AT5G08390 23.744 6.84e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02268 - - gmx:100795759 2175.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02268 4 49417847 49425448 Rops4g02268 4 49417847 49425448 ECH