Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02265 ATGGGTGGAGCGTGTTCTAGGAAGCAAGAGCGGGATAATGAGGATAGTCTTAGTAGAGGACTTCCACGAAGATATTGCAAATGTGGGAGTTTGAAATGGTGGACATCCTCATTTTCTTATCCATCTGTAGATTTTCACTCACGAAAAGGAGAATGTCCATCACTGCTCGACTTGTGCATTCAGAAAATAAATGAGGATATTGGTAAATATAGCACATTTTCTATGCTGCCACGGGATATAAGTCAGCAAATTTTTAATAAATTGGTTTACTCCCAGCGTCTAACTGGTGCTTCCCTTGAAGCTTTCCGAGATTGTGCTCTCCAGGATCTTTACTTGGGAGAATATGCTGGTGTTAATGATTCTTGGATGGATGTCATCTCATCTCAGGGTTCATCTTTGCTCTCTGTAGATCTTTCTGGGTCTGATGTCACTGATTTTGGGCTGACCCACCTTAAAGATTGTCAAAGTCTCATGTCCTTAAATCTAAATTTCTGCTACCAAATTTCAGATCATGGACTGGAATGTATCAGTGGCCTGTCAAACTTGACAAGTTTGAGTTTCAGAAGAAATGATTCAATATCTGCTCAAGGAATGAGTACCTTTTCTGGACTTGTTAACTTGGTCAAGTTGGACTTGGAGAGATGTCCTGGGATTCATGGAGGCCTTGTTCACCTTCAAGGTTTAACCAAGTTGGAATCTCTCAATATAAAGTGGTGTAATTGCATTACAGATTCTGATATGAAGCCCCTATCAGAGCTTGCAAGCTTGACAAGTCTAGAGATTTCTTGCAGTAAAGTCACTGATTTTGGCATCTGTTTTCTAAAAGGATTACGAAAGCTTGCCCTGTTAAATTTGGAAGGGTGCCTTGTAACAGCTGCATGCTTGGATTCTCTTGCAGAGCTTCCTGCGCTGTCAAACTTGAATCTCAATAGATGTAATCTTTCTTACAATGGATGTGAGAAGTTTTCACGATTGAAAAATTTGAAAGTATTAAACCTGGGATTTAATGACGTAGGAGATGCATGTTTAGCTCACTTGAAAGGATTGACAAAGTTGGAAATCTTGAACCTTGATTCATGTAAGATTGGTGATGAAGGATTGGTGAACTTGGCAGGCCTTAAGCAATTGATCTGCTTGGAATTGTCTGATACGGAAGTTGGAAACAATGGGCTAGAACATTTATCAGGATTGCCTAGTCTGGAGAAAATAAATCTGTCATTCACTGTGGTTACTGATAGTGGTCTAAGGAAATTACGTGGACTCTCATCTCTGAAGTCACTTAATTTGGATGTTTACCAAATTACTGATGCTGGACTGGCAACCCTTACAAGTTTGACCGGCCTCACTGACCTTGATTTGTTTGGCGCACGAATCACAGATTTTGGGACAAACTACCTGAAAAAATTTAAGAACCTGAGGTCCTTGGAAATATGTGGTGGAGGATTGACTGATGCGGGTGTGAAAAATATCAAAGAGCTTTCTTCTCTAATGTGCTTAAATTTGTCACAAAACAGCAACCTTACGGACAAAACTCTGGAGTTAATTTCTGGGCTTACTGGGTTGATTTCTTTGAATGTTTCAAATTCTCGTATCACCAATGCTGGACTGCAGCATTTGAAAACACTGAAGAACTTGAGATCTCTGACATTGGAGTCCTGTAAGGTGACAGCAAATGACATTAAGAAACTTAAATCAACATACCTCCCCAATCTGTCGACGGTAGTGGTGACGACAACGGCGATTGTAACAATCAACGGTGGTCACAGTGACGACGAGGGTGGTGGTGGAGGTGGGGGTGACGACAAAGACGACAGAGGCAGTCAACAATGA 1830 0.4098 MGGACSRKQERDNEDSLSRGLPRRYCKCGSLKWWTSSFSYPSVDFHSRKGECPSLLDLCIQKINEDIGKYSTFSMLPRDISQQIFNKLVYSQRLTGASLEAFRDCALQDLYLGEYAGVNDSWMDVISSQGSSLLSVDLSGSDVTDFGLTHLKDCQSLMSLNLNFCYQISDHGLECISGLSNLTSLSFRRNDSISAQGMSTFSGLVNLVKLDLERCPGIHGGLVHLQGLTKLESLNIKWCNCITDSDMKPLSELASLTSLEISCSKVTDFGICFLKGLRKLALLNLEGCLVTAACLDSLAELPALSNLNLNRCNLSYNGCEKFSRLKNLKVLNLGFNDVGDACLAHLKGLTKLEILNLDSCKIGDEGLVNLAGLKQLICLELSDTEVGNNGLEHLSGLPSLEKINLSFTVVTDSGLRKLRGLSSLKSLNLDVYQITDAGLATLTSLTGLTDLDLFGARITDFGTNYLKKFKNLRSLEICGGGLTDAGVKNIKELSSLMCLNLSQNSNLTDKTLELISGLTGLISLNVSNSRITNAGLQHLKTLKNLRSLTLESCKVTANDIKKLKSTYLPNLSTVVVTTTAIVTINGGHSDDEGGGGGGGDDKDDRGSQQ* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02265 609 MobiDBLite consensus disorder prediction 594 609 - -
Rops4g02265 609 SMART LRR_CC_2 154 179 IPR006553 -
Rops4g02265 609 SMART LRR_CC_2 421 445 IPR006553 -
Rops4g02265 609 SMART LRR_CC_2 542 566 IPR006553 -
Rops4g02265 609 SMART LRR_CC_2 301 325 IPR006553 -
Rops4g02265 609 SMART LRR_CC_2 228 253 IPR006553 -
Rops4g02265 609 SMART LRR_CC_2 397 420 IPR006553 -
Rops4g02265 609 SMART LRR_CC_2 349 373 IPR006553 -
Rops4g02265 609 SMART LRR_CC_2 493 518 IPR006553 -
Rops4g02265 609 MobiDBLite consensus disorder prediction 586 609 - -
Rops4g02265 609 Gene3D Ribonuclease Inhibitor 219 294 IPR032675 -
Rops4g02265 609 SUPERFAMILY RNI-like 273 568 - -
Rops4g02265 609 Gene3D Ribonuclease Inhibitor 295 382 IPR032675 -
Rops4g02265 609 Gene3D Ribonuclease Inhibitor 126 218 IPR032675 -
Rops4g02265 609 Gene3D Ribonuclease Inhibitor 383 455 IPR032675 -
Rops4g02265 609 Gene3D Ribonuclease Inhibitor 456 575 IPR032675 -
Rops4g02265 609 Pfam Leucine rich repeat 471 531 IPR001611 GO:0005515
Rops4g02265 609 Pfam Leucine rich repeat 156 215 IPR001611 GO:0005515
Rops4g02265 609 PANTHER UNCHARACTERIZED 42 250 - -
Rops4g02265 609 FunFam Leucine-rich repeat family protein 220 298 - -
Rops4g02265 609 Pfam Leucine Rich repeat 326 341 IPR001611 GO:0005515
Rops4g02265 609 Pfam Leucine Rich repeat 229 251 IPR001611 GO:0005515
Rops4g02265 609 Pfam Leucine Rich repeat 350 371 IPR001611 GO:0005515
Rops4g02265 609 SUPERFAMILY L domain-like 130 336 - -
Rops4g02265 609 FunFam Leucine-rich repeat family protein 474 573 - -
Rops4g02265 609 FunFam Predicted protein 118 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02265 Rops-Chr4 49403442 49417064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02265 223 504 Receptor kinase-like Gene Family AT1G75820 26.224 1.92e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02265 - - gmx:100800666 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02265 4 49403442 49417064 Rops4g02265 4 49403442 49417064 ECH