Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02247 ATGGCTCTGATTACATCCCAGCCAAAAAACCCCATTCTCCATCACCACTTTACCACCGTTCACCGTGCAATTCCACAATTGAACAGGTCCGTAGTTGGTCTTGGGTCCTTCTCTCACAATGCCAAGGCCATTAAAGTTGGTAACTTTAACTCAAAGGGAAGCAGATTTTCCCTTAAAAATAAGCCCTTTACCTATAATTTGCCATTGATAGCCAAAGCCAATGCAGCATTTGGAGAAGCTTTGGAACCAGAACAAGGGCCTTTGAAGCACAGAAAGATTTTGTTATCTGATGTGGAGGTGAAGAGAGAAAGGAGAGTGTTCTTAGGGAGGAAATGGAACTCATTGGATGTTGGCACTGCTGGTATTGTAGTGACCATGCATGTCCTTTCCCTCTTTGCACCATTTCAATTCAATTGGCCAGCTTTTTGGGTGGCTGTGGCTCTGTATATTGTCACAGGCCTTTTTGGTATCACACTGTCTTTCCATAGGAACCTTTCTCACAAGAGTTTCAAGCTTCCTAAATGGCTTGAATATTTGTTTGCCTATTGTGGTGTTCTTGCTCTTCAGGGGAACCCAATTGATTGGGTGAGCACTCATAGGTACCACCACCAGTTCTGTGATTCTGAGAAAGATCCACATAGCCCCACTGAAGGGTTCTGGTTTAGCCATATGAGTTGGCTCTTTGATACCAATTCTGTGACAGAAAGGTGCGGCGAGCCAAACAATGTTGGTGATTTAGAGAAACAAGCCTTCTATAGATTTATCAGAAGCACTTACATTGTCCATCCATTTGCTTTGGGAGCCCTTCTATATGCCATGGGAGGATTTCCTTTCCTTGTTTGGGGAATGGGAGTGAGGATTGTTTGGGTTTACCACATCACTTGGCTGGTAAATTCAGCTTGCCATGTATGGGGGAAGCAGCCATGGAACACCGGGGACTTATCAAGAAATAATTGGTGGGTGGCACTGCTTGCATTTGGTGAGGGTTGGCATAATAACCACCATGCTTTTGAGTACTCAGCTAGACATGGCATAGAGTGGTGGGAGCTAGACTTGACTTGGTACGTAGTGAGATTTCTTCAAGCTATTGGTTTGGCCACTGAGGTGAAGGTTCCAACTGAGATTCAGAAGCAGAGAATGGCATTGAATAATGATGGAATAGCCACATGA 1170 0.4444 MALITSQPKNPILHHHFTTVHRAIPQLNRSVVGLGSFSHNAKAIKVGNFNSKGSRFSLKNKPFTYNLPLIAKANAAFGEALEPEQGPLKHRKILLSDVEVKRERRVFLGRKWNSLDVGTAGIVVTMHVLSLFAPFQFNWPAFWVAVALYIVTGLFGITLSFHRNLSHKSFKLPKWLEYLFAYCGVLALQGNPIDWVSTHRYHHQFCDSEKDPHSPTEGFWFSHMSWLFDTNSVTERCGEPNNVGDLEKQAFYRFIRSTYIVHPFALGALLYAMGGFPFLVWGMGVRIVWVYHITWLVNSACHVWGKQPWNTGDLSRNNWWVALLAFGEGWHNNHHAFEYSARHGIEWWELDLTWYVVRFLQAIGLATEVKVPTEIQKQRMALNNDGIAT* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02247 389 PRINTS Fatty acid desaturase family 1 signature 284 305 IPR015876 GO:0016717
Rops4g02247 389 PRINTS Fatty acid desaturase family 1 signature 162 182 IPR015876 GO:0016717
Rops4g02247 389 PRINTS Fatty acid desaturase family 1 signature 327 341 IPR015876 GO:0016717
Rops4g02247 389 PRINTS Fatty acid desaturase family 1 signature 199 228 IPR015876 GO:0016717
Rops4g02247 389 Pfam Fatty acid desaturase 139 358 IPR005804 GO:0006629
Rops4g02247 389 PANTHER ACYL-COA DESATURASE 93 380 IPR015876 GO:0016717
Rops4g02247 389 CDD Delta9-FADS-like 139 370 IPR015876 GO:0016717
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02247 Rops-Chr4 49201764 49203833 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02247 1 385 Lipid Metabolism Gene Families AT3G15850 63.683 4.55e-180 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02247 K20416 - gmx:100786391 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02247 4 49201764 49203833 Rops4g02247 4 49201764 49203833 ECH