Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02215 ATGGGTTCCGGGTCGGGTTCTCTCGTGTGGTTCCGGAAGGGTCTTCGGATCCATGACAACCCGGCTCTCGAATTCGCTTCCAAAGGTGCTTCTCATCTTTACCCTGTCTTCGTCATCGATCCACATTACATGAAACCCGACCCGAATGCTTTCTCACCCGGGTCCTCACGTGCGGGTCTCAACCGCATCAACTTCTTGCTCCAGAGCCTCGTTGACCTTGACCTCAACCTTAAGAACCTTGGCTCGCGACTCTTGATTCTAAAGGGTGACCCTGGTGAGGTTATCATTCGATGCTTGAAAGAGTGGAATGTCAGAAAGTTATGCTTTGAGTATGATACTGAACCATATTATCAGGCTCTGGATGTTAAAGTTAAGAACTTTGCCCTTGAAGCAGGAATTGAAGTTTGCTCTCCTGTAAGTCACACACTCTTCAATTCAATGGATATTATAAAGAAGAATGGAGGGAAGCCGCCACTTAGTTATCAATCATTTGTCAAGCTTGCTGGGGAACCACCGTCCCCTCTCTCAACCAAGTATTCCTCACTTCCTCCTGTTGGCCATCTTGGAAGTTGTGATATTTTTGAAGTTCCAACAATCAAAGACCTTGGATATGATGATGCTCTACAGGATGAGTTCTCTCCTTTCAAAGGTGGTGAATCAGAAGCATTGAAGAGGTTGGAAGAATGCATGAAAGACAAGAAATGGGTGGCAAACTTTGAGAAACCGAAGGGCGATCCATCTGCATTTCTTAGGCCAGCCACAACTGTTTTATCACCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTATCATTGCATTCGAGATGTATACCAAAGTGTGCCAAAACACACATCACCACCTGTTTCTCTTGTAGGACAGTTGTTGTGGCGAGACTTCTTTTACACAGCAGCTTTTGGGACTCCAAATTTTGATAGGATGAAAGGCAATAGGATATGCAAGCAGATTCCTTGGAAGGATGATGATAAACTGGTGGAGGCTTGGAGGGATGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGATCCAGCTACGCCAATGGGGTTGGATGCATCATTTGGCACGGCATTGTGTTGCATGTTTTCTAACTCGAGGTGATCTGTTTATTCATTGGGAAAAAGGACGTGATGTCTTTGAGAGGCTTCTGATTGATTCAGATTGGGCAATCAATAATGGAAATTGGATGTGGCTCTCATGTTCATCTTTCTTTTATCAGTATAATCGTATTTATTCCCCAATCACATTTGGTAAGAAGTATGATCCTAATGGTGACTATATCAGGCATTTTCTCCCAGTCTTGAAAGGTATGCCTAAGGAGTACATTTATGAACCATGGACTGCTCCTTTAAGCATTCAGACCAAAGCAAATTGCATAATCGGCAAAGACTACCCAATGCCAGTTGTTTCTCATGATGCTGCAAGTAAAGAATGCAAAAGGAAAATGGGTGAGGCATATGCATTGAATAAAGAATTGAATGGTTTGGTTAGTGAAGATGATCTGAAAAACTTGAGGAGGAAATTTGATGAGGGTGAAAAGCAAGAGGCTAAAGCTAAAAGATCTAGACAACAGCTCATTGGCTGA 1608 0.4303 MGSGSGSLVWFRKGLRIHDNPALEFASKGASHLYPVFVIDPHYMKPDPNAFSPGSSRAGLNRINFLLQSLVDLDLNLKNLGSRLLILKGDPGEVIIRCLKEWNVRKLCFEYDTEPYYQALDVKVKNFALEAGIEVCSPVSHTLFNSMDIIKKNGGKPPLSYQSFVKLAGEPPSPLSTKYSSLPPVGHLGSCDIFEVPTIKDLGYDDALQDEFSPFKGGESEALKRLEECMKDKKWVANFEKPKGDPSAFLRPATTVLSPYLKFGCLSSRYFYHCIRDVYQSVPKHTSPPVSLVGQLLWRDFFYTAAFGTPNFDRMKGNRICKQIPWKDDDKLVEAWRDARTGFPWIDAIMIQLRQWGWMHHLARHCVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWMWLSCSSFFYQYNRIYSPITFGKKYDPNGDYIRHFLPVLKGMPKEYIYEPWTAPLSIQTKANCIIGKDYPMPVVSHDAASKECKRKMGEAYALNKELNGLVSEDDLKNLRRKFDEGEKQEAKAKRSRQQLIG* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02215 535 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 143 IPR006050 -
Rops4g02215 535 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 211 496 IPR036134 -
Rops4g02215 535 Coils Coil 509 529 - -
Rops4g02215 535 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 310 534 - -
Rops4g02215 535 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 187 IPR036155 -
Rops4g02215 535 FunFam Cryptochrome-1 310 532 - -
Rops4g02215 535 Pfam DNA photolyase 7 168 IPR006050 -
Rops4g02215 535 MobiDBLite consensus disorder prediction 515 535 - -
Rops4g02215 535 Pfam FAD binding domain of DNA photolyase 294 490 IPR005101 -
Rops4g02215 535 Gene3D HUPs 8 217 IPR014729 -
Rops4g02215 535 PANTHER CRYPTOCHROME 7 497 IPR002081 -
Rops4g02215 535 Gene3D - 141 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02215 Rops-Chr4 48840398 48844733 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02215 K02295 - gmx:100780347 1006.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02215 4 48840398 48844733 Rops4g02215 4 48840398 48844733 ECH