Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02183 ATGATGGAGCTGATTTCGGGTCTACCCGAAGACGTAGCCCGAGAGTGTCTAATTCGGGTTTCCTACCAGCAATTCCCTACGATGGCATCGGTTTGCAGAGTGTGGAAGAAGGAGATACACACGCCGGAGTTTCACCGTCAACGGCGGAGCACAGGGCACACCCAGAAGCTTCTAGTGATGGTTCAGGCACGGGTTGAACCGGAAAAATGCGGATCCGGTTCGATGAAGCACCTGACGAACCCGGTTTACCGGCTCAGCGCATTCGAACCGGGAACGTGTAACTGGAGCGAGTTACCGCCACCACCCGGTTTCGATTCCGGGTTACCCATGTTGTGTCAGTTAGCGAGTGTCGGGCACGATCTGGTGGTTATGGGTGGGTTGGACCCGGATTCGTGGAAAGCATCGAATTCTGTTTTTATTTATAATTTATTGTCGGCGAGGTGGCGCCGTGGGGCTGAAATGCCTGGTGGGCCCCGCACGTTTTTCGCTTGCGCGTCGGATTCTCACAGGAGGGTTTTCGTCGCCGGCGGACACGACGACGAGAAGAACGCGCTGAGGTCGGCGTTAGCATATGATGTGGCTGCGGATGAGTGGGCTCAGCTGCCGGACATGGCGGCGGAGCGGGACGAGTGCAAGGCGGTGTTCCGCCGCGGGTGTTTCGTCGTCGTCGGTGGTTATCGGACGGAGAATCAGGGAAGGTTCGAGAGGAGTGCGGAGGCGTTTGATGTTGCCACGTGGAAGTGGGGTAAGGTGGAAGAGGAGTACTTAGATTGCGCCACGTGTCCGAGGACTTTAGTGGACCGTGGTGATGGTGAGGAGAGTGTGTTCATGTGCTGCGACGGTGACTTGTTGGTTATGCGGGGGGACACGTGGCAGAAGTTGGGGAGAGTGCCGGGTGAGATTCGCAACGTGGCGTATGTTGGAGCGTTCGATGGGGTGGTGATGTTGATTGGATCAAGTGACTATGGTGAAATGCATATGGGTTTTGTGTTTGATGTGAAAAGTTGCAGTTGGAGAAAATTGGAGAGCCCAGAGTGTTTCATGGGGCATGTCCAAACAGGTTGTATTTTGGAGATTTAG 1080 0.5519 MMELISGLPEDVARECLIRVSYQQFPTMASVCRVWKKEIHTPEFHRQRRSTGHTQKLLVMVQARVEPEKCGSGSMKHLTNPVYRLSAFEPGTCNWSELPPPPGFDSGLPMLCQLASVGHDLVVMGGLDPDSWKASNSVFIYNLLSARWRRGAEMPGGPRTFFACASDSHRRVFVAGGHDDEKNALRSALAYDVAADEWAQLPDMAAERDECKAVFRRGCFVVVGGYRTENQGRFERSAEAFDVATWKWGKVEEEYLDCATCPRTLVDRGDGEESVFMCCDGDLLVMRGDTWQKLGRVPGEIRNVAYVGAFDGVVMLIGSSDYGEMHMGFVFDVKSCSWRKLESPECFMGHVQTGCILEI* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02183 359 Pfam Kelch motif 171 204 IPR006652 GO:0005515
Rops4g02183 359 SUPERFAMILY F-box domain 4 56 IPR036047 GO:0005515
Rops4g02183 359 SMART kelc_smart 120 168 IPR006652 GO:0005515
Rops4g02183 359 SMART kelc_smart 171 218 IPR006652 GO:0005515
Rops4g02183 359 PANTHER OS02G0208700 PROTEIN 2 359 IPR044595 GO:0080037|GO:2000762
Rops4g02183 359 CDD F-box_AtAFR-like 4 48 - -
Rops4g02183 359 Gene3D - 70 349 IPR015915 GO:0005515
Rops4g02183 359 Pfam F-box domain 5 46 IPR001810 GO:0005515
Rops4g02183 359 Pfam Kelch motif 110 159 - -
Rops4g02183 359 SUPERFAMILY Kelch motif 80 343 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02183 Rops-Chr4 48241632 48242999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02183 8 202 Miscellaneous Gene Families AT4G33900 23.611 1.16e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02183 - - gmx:100796602 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02183 4 48241632 48242999 Rops4g02183 4 48241632 48242999 ECH