Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02176 ATGGCCATAGCCCAAACCATTCTCACTCAGGACCTCACCGACGAGCTTGTCCTCGTCGACCCCAATTCCGACAAGCTTCGCGGCGAGATGCTGGACCTGCAGCATGCCGCCGACTTCCTCCCACGCACCAAGATTCACACCTCCACTGACTACTCCGTCACGGTGGATTCCGACCTCTGCATCGTCACCGCGGTGGATATTCTCACTTACGTGGCATGGAAGCTCTCTGGTTTCCCCTCTAACCGTGTCATTGGCTCTGGCACCAACTTGGACTATTCCCGTTTTCGTTTCCTCATTGCTGATCATCTTGACGTCAACGCTCATGATGTCCAGGCTTACATAGTGGGGGAACATGGTGATAGCTCCGTGGCACTATGGTTTAGCATTAGTGTTGGCGGTGTTCCGCTACTGAGTTTTCTGGAGAAACAGCAAATTGCTTACGAGAAAGAAACGTTGGAGAACATACACAAAGAAGTTATAGGGCTGCATATGAAGGACCAAAGGAAGATCCATCCAGTGTCGGTTTTGGCTAAGGTTTTTTATGATATCGATCGTGGGGAAGTGTTCCTTAGCTTGCCTGCACAGCTTGGTAGAGGAGGGGTATTGGGTGTAACCAATGTGCACATGACAGAAGAGGAGACAGAAAGGCTCAGGGACTCTGCTAGGACCATTCTAGAGGTGCAGAATCAGTTGGACCATGGCAAGTCTTTTGAGGTTACTGAGTTATCAGTTAGGTCGGCCAAGTTTATTGCACGCAAACAGTGGGTTGTTGCAGGAGCAGATGATATGGTCATTCGTGTATATAATTACAACACAATGGATAAAGTTAAAGTATTTGAGGCACATACAGATTACATTAGGTGTGTGGCTGTTCATCCTAACCTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCCAGTGCATCTCTTGACCGCACCATAAAACCAGCATGGACAACAGTGGGAAAATCATTTGGGCTAAAACATAATGAGATTCAAACTGTCAATATAAGAAGTGTAGGAGCAGATGTGGAGATTGCTGATGGAGAAAGGCTACCATTGGCTGTTAAAGAATTGGGCACCTGTGATCTCTATCCACAAAGTTTAAGGCACAATCCAAATGGGAGGTTTGTTGTTGTTTGTGGAGATGGTGAATATATTATATACACTGCTTTGGCATGGAGAAATAGGTCGGTTGGTTCTGCACTGGAATTTGTTTGGTCTTCGGATGGAGAGTATGCTGTAAGAGAAAGTACATCCAAGGTTTCTAATTGGGTTTTAACCCCAGATGGGGCACTAATGGGCCTGGCCAAGAGAACAAATAGGCCTTAG 1443 0.4602 MAIAQTILTQDLTDELVLVDPNSDKLRGEMLDLQHAADFLPRTKIHTSTDYSVTVDSDLCIVTAVDILTYVAWKLSGFPSNRVIGSGTNLDYSRFRFLIADHLDVNAHDVQAYIVGEHGDSSVALWFSISVGGVPLLSFLEKQQIAYEKETLENIHKEVIGLHMKDQRKIHPVSVLAKVFYDIDRGEVFLSLPAQLGRGGVLGVTNVHMTEEETERLRDSARTILEVQNQLDHGKSFEVTELSVRSAKFIARKQWVVAGADDMVIRVYNYNTMDKVKVFEAHTDYIRCVAVHPNLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKPAWTTVGKSFGLKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSVGSALEFVWSSDGEYAVRESTSKVSNWVLTPDGALMGLAKRTNRP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02176 480 Gene3D - 65 86 - -
Rops4g02176 480 SUPERFAMILY WD40 repeat-like 236 426 IPR036322 GO:0005515
Rops4g02176 480 Pfam Coatomer WD associated region 366 459 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Rops4g02176 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 85 IPR036291 -
Rops4g02176 480 Pfam lactate/malate dehydrogenase, NAD binding domain 2 64 IPR001236 GO:0016491
Rops4g02176 480 Gene3D - 87 163 IPR015955 GO:0003824|GO:0016616
Rops4g02176 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 311 IPR001680 GO:0005515
Rops4g02176 480 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 1 64 - -
Rops4g02176 480 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 88 159 IPR022383 GO:0016616
Rops4g02176 480 Gene3D - 210 389 IPR015943 GO:0005515
Rops4g02176 480 Gene3D - 1 64 - -
Rops4g02176 480 SUPERFAMILY LDH C-terminal domain-like 86 231 IPR015955 GO:0003824|GO:0016616
Rops4g02176 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 311 - -
Rops4g02176 480 SMART WD40_4 315 356 IPR001680 GO:0005515
Rops4g02176 480 SMART WD40_4 272 311 IPR001680 GO:0005515
Rops4g02176 480 SMART WD40_4 230 269 IPR001680 GO:0005515
Rops4g02176 480 ProSitePatterns L-lactate dehydrogenase active site. 115 121 IPR018177 GO:0004459
Rops4g02176 480 Pfam WD domain, G-beta repeat 275 311 IPR001680 GO:0005515
Rops4g02176 480 Pfam WD domain, G-beta repeat 318 352 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02176 Rops-Chr4 48212784 48217086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02176 244 454 Miscellaneous Gene Families AT5G08390 25.112 2.40e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02176 K00016 - pvy:116120465 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02176 4 48212784 48217086 Rops4g02176 4 48212784 48217086 ECH
Rops7g00193 7 2718426 2728756 Rops4g02176 4 48212784 48217086 PCT