Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02144 ATGAAAATGATGGGTTTCTTTGTAATACAACAATTTGTAGCTTTATCTTTCATTACATCACAGTCCTCAAACTCAAATCTGCTCCAATTCAAATACGCCATTCCAAAATCTTCATCCGAGAACAACAAGAAGCCTGTGGAAAGGGACTTTCTTGTGAGGTTTGGAGAGGGTTTTTATCGTTTCGCCATGAGGGGAAGGCAGCGAGTAGCATCCAGGGAATACATATTAGGGCATGATAAAGAAGAAAATCCAGCTTCGGTGCGTTTAACAAATGCCAAACCTTGTTGGCGGCGCTCTTTGCGACATGTATTAGTGGCTTCTATTTCGTCATTCTTATATGGCTACCATATTGGAGTAGTCAATGAAACCTTAGAGAGCATTTCTATAGATCTTGGCTTTAGTGGGAATACAATGGCTGAAGGTCTTGTAGTAAGCATATGTTTAGGAGGTGCTTTTGTTGGATCTCTGTTCAGTGGGTGGATTGCTGATGGGGTTGGGCGTAGAAGAAGTTTCCAGTTGTGTGCTTTGCCTATGATCATTGGGGCAGGAATGAGTGCAACATCAAAAACCCTGTGGGGCATGCTTTTGGGAAGGTTATTTGTTGGTACTGGAATGGGACTTGGCCCACCTGTTGCAGCTCTTTATGTGGCGGAGGTCTCACCTCCAGCTGTGCGGGGTACTTATGGGGGCTTAACTCAGATTGCAACATGTCTTGGACTCATGGGGTCTCTATTTATTGGAATCCCAGCCAAGGAAATTGTGGGTTGGTGGCGGATTTGTTTCTGGGTATCTGTCATTCCTGCTACAATACTTGCCCTTTTCATGGAGATCTGTGCTGAGAGTCCTCATTGGCTTTTCAAGAGAGGAAGAGCCGTTGAAGCTGAAGCTGAATTTGAGAAGCTCTTGGGTGGAGTACACGTGAAATCTGCAATAACTGAACTGTCAAAGTCTGACAGAGGTGATGAGCCTGGTACAGGAAAACTCTCCGAATTATTCTTTGGCTCCCATTTCAAAGTGATGTTCATTGGATCTACGCTTTTTGCTTTGCAGCAGCTATCAGGCATAAATGCTGTTTTCTATTTCTCTTCAGTTGTCTTTGAAAGCTTTGGTGTACCATCTGATCTTGCAAACACATGTGTAGGAATTTGTAATTTATTAGGGTCAGTTGTTGCAATGATTCTGATGGATAAACTTGGAAGGAAAGTGCTTCTCCTGGGTAGCTTTCTGGGCATGGCGATAGCAATGGGTCTACAAGTCATTGCTGCAAGTTCTTTTGCATCAGGATTTGGTGCAATGTATCTATCCATTGGTGGCATGTTGATGTTTGTGCTGTCATTTGCTCTTGGTTGTGGTCCAGTTCCTTGTCTCCTCATGTCTGAAATACTGCCCGGCAAGATCAGAGCCAAGGCAATGGCAATTTGCTTGGCTGTGCATTGGGTGATAAACTTCTTTGTGGGTCTATTATTTTTGCGGTTGCTGGAACAAATTGGGGCACAACTCCTGTATAGCATTTTTGGTTCATTTTGTTTGATCTCTGTGATTTTTGTGAAGAAATATGTCCCAGAAACAAAAGGGAAGTCACTCCAGGAAATTGAGATTGCACTTCTTGCACAAGAAGCTACCTAA 1626 0.433 MKMMGFFVIQQFVALSFITSQSSNSNLLQFKYAIPKSSSENNKKPVERDFLVRFGEGFYRFAMRGRQRVASREYILGHDKEENPASVRLTNAKPCWRRSLRHVLVASISSFLYGYHIGVVNETLESISIDLGFSGNTMAEGLVVSICLGGAFVGSLFSGWIADGVGRRRSFQLCALPMIIGAGMSATSKTLWGMLLGRLFVGTGMGLGPPVAALYVAEVSPPAVRGTYGGLTQIATCLGLMGSLFIGIPAKEIVGWWRICFWVSVIPATILALFMEICAESPHWLFKRGRAVEAEAEFEKLLGGVHVKSAITELSKSDRGDEPGTGKLSELFFGSHFKVMFIGSTLFALQQLSGINAVFYFSSVVFESFGVPSDLANTCVGICNLLGSVVAMILMDKLGRKVLLLGSFLGMAIAMGLQVIAASSFASGFGAMYLSIGGMLMFVLSFALGCGPVPCLLMSEILPGKIRAKAMAICLAVHWVINFFVGLLFLRLLEQIGAQLLYSIFGSFCLISVIFVKKYVPETKGKSLQEIEIALLAQEAT* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02144 541 CDD MFS_GLUT_like 105 522 - -
Rops4g02144 541 ProSitePatterns Sugar transport proteins signature 1. 158 175 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 NCBIfam sugar porter family MFS transporter 98 531 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 ProSiteProfiles Major facilitator superfamily (MFS) profile. 102 524 IPR020846 GO:0022857
Rops4g02144 541 Pfam Sugar (and other) transporter 103 533 IPR005828 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 Gene3D MFS general substrate transporter like domains 96 536 IPR036259 -
Rops4g02144 541 ProSitePatterns Sugar transport proteins signature 1. 391 407 IPR005829 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 PRINTS Sugar transporter signature 110 120 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 PRINTS Sugar transporter signature 350 360 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 PRINTS Sugar transporter signature 195 214 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 PRINTS Sugar transporter signature 436 457 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 PRINTS Sugar transporter signature 459 471 IPR003663 GO:0016020|GO:0022857|GO:0055085
Rops4g02144 541 SUPERFAMILY MFS general substrate transporter 88 532 IPR036259 -
Rops4g02144 541 PANTHER SOLUTE CARRIER FAMILY 2 95 535 IPR045263 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02144 Rops-Chr4 47926742 47934326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02144 57 480 Organic Solute Cotransporters AT1G67300 65.972 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02144 - - aprc:113857086 842.032