Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02088 ATGATTTCATTTTCCGTTTCTCGTTTCCCTCCAAACCCATCATTTCCACTCCGAAAGCCATTCCTAGTGACAAATGCAAGCTTTCGCATTGATCCACCACAAGACCCACATACCTCAAATTCAACCAACACTCATGGCTTTGAGTTGCAACAGAATGCTTCTTCTGGGGATAATAAAGTTGAAAACTTTCGAAGAGAAAAGGCAAGTGGGAGAGTGATTGGGGTGAACCCAGTTCAGGGTGGTGATGGGGTTCTCATTGGAAGGAAGAAAAAGAAAGCAAAAGAGAAAATTTACTGGGTTTGCAGCAATTGTGGGTACACTGCTGGGCAATGGTGGGGTGTGTGTAGATCATGCAGTGTATCTGGGACCATGAAAGAGTTTCATGAGACAAAATCCTGTGATGTTGATAGTAAGGTCAATGGTTTTTCGGTTTTGGAAGATGGTGTGGGGTCGTGGCTTCCACAACAGGAAGGTGAGTTGCGTCCTTTGAGATTGGCAGAGGTGAATAGAGGACTTGATCATCTGCATTGGAGAATTCCTTTGTCTGGTCCTTTTGGAAATGAAGTTTCTAGAGTGCTTGGTGGTGGCCTTGTACCAGGCTCATTGACATTAGTTGGTGGTGATCCTGGTGTTGGGAAGAGTACTCTGTTGTTGCAGATTGCTGCAATAATTGCAGAAGGGAACAAAGATGGTGAAGCATCTCCAGTTGTGTATGTCTCTGGTGAAGAGAGCATTGAGCAAATTGGTAACAGAGCAGATCGCCTTAGGATTGAATCAGATATCTATTTATATTCAAGTAATGATATTGAGGACATACTGAAGAAAGTTCAGCAGCTCTCCCCTGGGGCTCTGGTTATTGATTCGGTACAAACTGTTTATTTGAAAGGAATAATGGGAAGTCCTGGAGGGATTATGCAGGTGAAGGAATGTACTTCAGCTTTACTGCGATTTGCAAAGACGACGAACATCCCAGTTCTTTTGATTGGACATGTGACAAAATCTGGAGACATAGCAGGACCTCGTGTCTTGGAGCATATTGTTGATGTTGTTTTGTATATGGAAGGTGAGAAGTTCTCTTCCCATCGTATGCTTCGAGCTGTGAAAAATAGATTTGGATCCACTGATGAGCTTGGAGTTTTTGAGATGTCGCATTCAGGACTTCAGGCTGTTTCAAATGCCAGTGAAATGTTTCTAAGTGAGCAACAACTAGATTCAGAAATTTTAGCTGGACTAGCTGTAGCTGTAATAATGGATGGGTCCCGAACATTTCTTATTGAAATTCAGGCACTTTGTCTTTCTGGTTCAACAGGTTCAAGGCAAGTGAATGGGATCCACGCAAATAGAGCCGATATGATCATATCTGTTCTAATAAAGCAAGCGGGTCTTCGTCTTCAAGAACATGCTGTGTTTTTGAATGTTGTAAGTGGATTGACACTGGCTGAGACTGCAGGAGATCTTGCAATAGCAGCTGCAATTTGCAGCAGTTGCTTAGAGCTCCCTATTCCGAATGACATTGCATTCATTGGTGAAATTGGTCTTGGTGGTGAGCTTCGCTTGGTTCCTAGAATAGAGAAAAGGATATCCACAGTGGCGAAATTGGGTTACAGAATGTGTATAGTACCAAAGGCAGCTGAAAAAGCTTTAGGAACTGAAGGTATAGAGAAGATAAAAGTTGTTGGTTGCAGGAATCTGAAAGAAGTTATTAACACTGTATTTCCAAATATAATGAGAAGAAGCAAGTGA 1743 0.4234 MISFSVSRFPPNPSFPLRKPFLVTNASFRIDPPQDPHTSNSTNTHGFELQQNASSGDNKVENFRREKASGRVIGVNPVQGGDGVLIGRKKKKAKEKIYWVCSNCGYTAGQWWGVCRSCSVSGTMKEFHETKSCDVDSKVNGFSVLEDGVGSWLPQQEGELRPLRLAEVNRGLDHLHWRIPLSGPFGNEVSRVLGGGLVPGSLTLVGGDPGVGKSTLLLQIAAIIAEGNKDGEASPVVYVSGEESIEQIGNRADRLRIESDIYLYSSNDIEDILKKVQQLSPGALVIDSVQTVYLKGIMGSPGGIMQVKECTSALLRFAKTTNIPVLLIGHVTKSGDIAGPRVLEHIVDVVLYMEGEKFSSHRMLRAVKNRFGSTDELGVFEMSHSGLQAVSNASEMFLSEQQLDSEILAGLAVAVIMDGSRTFLIEIQALCLSGSTGSRQVNGIHANRADMIISVLIKQAGLRLQEHAVFLNVVSGLTLAETAGDLAIAAAICSSCLELPIPNDIAFIGEIGLGGELRLVPRIEKRISTVAKLGYRMCIVPKAAEKALGTEGIEKIKVVGCRNLKEVINTVFPNIMRRSK* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02088 580 FunFam DNA repair protein RadA 183 388 - -
Rops4g02088 580 SUPERFAMILY Ribosomal protein S5 domain 2-like 368 572 IPR020568 -
Rops4g02088 580 SMART AAA_5 199 357 IPR003593 GO:0016887
Rops4g02088 580 Gene3D - 188 388 IPR027417 -
Rops4g02088 580 NCBIfam DNA repair protein RadA 93 558 IPR004504 GO:0003684|GO:0005524|GO:0006281
Rops4g02088 580 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 382 IPR027417 -
Rops4g02088 580 ProSiteProfiles RecA family profile 1. 178 331 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Rops4g02088 580 Pfam AAA domain 192 335 - -
Rops4g02088 580 Gene3D - 407 579 IPR014721 -
Rops4g02088 580 MobiDBLite consensus disorder prediction 31 58 - -
Rops4g02088 580 Pfam Subunit ChlI of Mg-chelatase 453 543 - -
Rops4g02088 580 Pfam Rubredoxin metal binding domain 99 126 IPR041166 -
Rops4g02088 580 PANTHER DNA REPAIR PROTEIN RADA 51 573 - -
Rops4g02088 580 CDD RadA_SMS_N 99 390 - -
Rops4g02088 580 FunFam DNA repair protein radA isogeny 406 575 - -
Rops4g02088 580 PRINTS DNA repair protein radA signature 361 387 - -
Rops4g02088 580 PRINTS DNA repair protein radA signature 101 125 - -
Rops4g02088 580 PRINTS DNA repair protein radA signature 191 219 - -
Rops4g02088 580 PRINTS DNA repair protein radA signature 326 354 - -
Rops4g02088 580 PRINTS DNA repair protein radA signature 287 311 - -
Rops4g02088 580 PRINTS DNA repair protein radA signature 436 459 - -
Rops4g02088 580 MobiDBLite consensus disorder prediction 29 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02088 Rops-Chr4 47226378 47244276 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02088 K04485 - gmx:100794165 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02088 4 47226378 47244276 Rops4g02088 4 47226378 47244276 ECH