Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02076 ATGATGAGAAGAAGAAACATTAGGTTTCATCAATTTTCGACTTTGATTGAATCCCACCTCAAAAAACCAAATACTAGGTTTCTACCTATACCTCATCGAACGATTCCACAACCCAATGGACAGGATCTTGATTTTGTTAACGTTGCTCACAGCCACCTTATTCACTCTCACTGGGACAAACTCAAACCCTTATCAACCTCTCTTACCTCATTCAGGGTCAAACACATTCTCCTCAAGCTCCGAAACGACGCCGTTCTCTCCCTCGAGTTCTTCAATTGGGTCCAACACCACAACCCCTCTTCTCACACCCTCGATACCCATTCCATCATTCTCCACATCCTTGCCAAAAATCGAAACTTTAAAACATCCCAATCCATTCTCCGCAAAATCCTCACTTCAAACACCATCATCGATTTCCCTTCTAAGCTCTTCGATGCATTGCTCTATTCTTACCATCTCTGTGATTCTTCGCCCTTTGTTTTCGACGCTCTCTTCAAGACCTTTGCTCATTTGAACAAGCTTAGAAATGCTACTGAAACTTTCATTCGAATGAAGGAATATGGGTTCTTCCCCACTGTTGAATCCTGCAACGCTTTTCTCAGTTCAATGCTTAATCATCAAAGATATGATGTTGTTCTTGCATTTTATCGCCAAATGCGTCGTGATTGCCTTCCCCCCAATGTTTACACTCTTAACATGGTTGTCTGTGCATATTGCAAGTTAGGGAAACTGCAAGAGGCTTTAGAGGTGTTGCAGAGGATGAGGGACATGGGTTTGAGTCCTAATGTTGTGTCCTTTAACGCATTGATTTCGGGGTATTGTGACAAGGGTCTACTTGGGTTGGCCTTAAAAGTTAAAACTATGATGGGAAAATATGGGGTGTGCCCAAATGTGGTTACTTTTAATACACTTGTTAATGGGTTTTGTAAGGAGAGGAAGCTGCATGAAGCTAATAGGATTTTCAATGAGATGAAGGTTGCCAATGTGGCTCCCAATACTGTAACATATAATACTTTGATTAATGGGTATAGTCAGGTTGGTAACAGTGAAATGGGTGGTAGGCTTTATGAGGAGATGGTGAGAAATCAGGTTAAGGCTGATATCTTGACTTACAATGCATTGATTTTGGGACTGTGTAAGGATGGGAAGACAAAGAAAGCTGCATATTTGGTTAAAGAACTTGATAAGGAGAATTTGGTCCCTAATGCTTCTACCTTTTCTGCTCTTATTACGGGGCAGTGTGTGAGGAACAACTCTGAGCGTGCTTTTCAGATTTATAGAAGCATGATAAGGAGTGGTTATAGTCCTAATGAGAATACTTTCCATATGCTGATATCTGCCTTCTGCAAGAATGAAGACTTTGATGGAGCTGCGCAAGTCTTGAGGGACATGTTGGACAGAGTTATGACTCCTGATTCCTGTATCTTATCTGAGCTCTTTAGTGGACTTTGCAGGTGTGGAAGAAATAAGATGGCATTGATGCTATGTAGTGAAATTGAAGAGAGGCATCTATTACCAGAAGGTTTTGACAAAGAAAAAATAGCCATCACCGGTCCAGAAAATAAGACAAATAATTGA 1578 0.41 MMRRRNIRFHQFSTLIESHLKKPNTRFLPIPHRTIPQPNGQDLDFVNVAHSHLIHSHWDKLKPLSTSLTSFRVKHILLKLRNDAVLSLEFFNWVQHHNPSSHTLDTHSIILHILAKNRNFKTSQSILRKILTSNTIIDFPSKLFDALLYSYHLCDSSPFVFDALFKTFAHLNKLRNATETFIRMKEYGFFPTVESCNAFLSSMLNHQRYDVVLAFYRQMRRDCLPPNVYTLNMVVCAYCKLGKLQEALEVLQRMRDMGLSPNVVSFNALISGYCDKGLLGLALKVKTMMGKYGVCPNVVTFNTLVNGFCKERKLHEANRIFNEMKVANVAPNTVTYNTLINGYSQVGNSEMGGRLYEEMVRNQVKADILTYNALILGLCKDGKTKKAAYLVKELDKENLVPNASTFSALITGQCVRNNSERAFQIYRSMIRSGYSPNENTFHMLISAFCKNEDFDGAAQVLRDMLDRVMTPDSCILSELFSGLCRCGRNKMALMLCSEIEERHLLPEGFDKEKIAITGPENKTNN* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Rops4g02076 525 Pfam PPR repeat 479 502 IPR002885 -
Rops4g02076 525 Gene3D Tetratricopeptide repeat domain 255 327 IPR011990 GO:0005515
Rops4g02076 525 Gene3D Tetratricopeptide repeat domain 328 394 IPR011990 GO:0005515
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 402 436 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 405 438 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 229 263 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 370 403 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 195 228 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 334 367 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 299 333 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 440 472 IPR002885 -
Rops4g02076 525 NCBIfam pentatricopeptide repeat 264 298 IPR002885 -
Rops4g02076 525 Gene3D Tetratricopeptide repeat domain 80 254 IPR011990 GO:0005515
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Rops4g02076 525 Gene3D Tetratricopeptide repeat domain 395 517 IPR011990 GO:0005515
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Rops4g02076 525 Pfam PPR repeat 433 464 IPR002885 -
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Rops4g02076 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Rops4g02076 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 32 348 - -
Rops4g02076 525 Pfam PPR repeat family 367 414 IPR002885 -
Rops4g02076 525 Pfam PPR repeat family 296 342 IPR002885 -
Rops4g02076 525 Pfam Pentatricopeptide repeat domain 217 274 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02076 Rops-Chr4 47098338 47100192 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02076 159 513 Glycosyltransferase AT1G05670 29.396 1.21e-53 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02076 - - aprc:113849013 829.706