Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02053 ATGAGTTTCTTCAAATGCTTCCATTTGTTCATCATCATTTTCCATGTCTTTGCTGCAACACCCATCTTCCCATCAACACATTCCTCCCCTTCCACCCCAAACCAGTTTATCACCAACTTTCTTGACACTGCCATGAAGCCTGAGGTTTTTGATTGGATGGTCAAAATCAGAAGAAAGATTCATGAGTATCCAGAACTTCTCTATGAAGAATTTGAGACCAGTGAACTGATAAGAGCAGAATTGGATAAACTGGGCATCCCTTATAGACACCCGGTTGCAGTCACTGGTGTTATTGGCTTCATAGGGACTGGAAGGTCACCTTATGTTGCAATAAGAGCTGATATGGATGCTCTTGCTATGCAGGAATTGGTGGAGTGGGAGCATAAGAGTAAAGTACCTGGAAAGATGCATGCTTGCGGTCATGATGCTCATGTTACCATGCTTCTTGGTGCTGCAAAGATTCTCAAAGAGCATGAAAAAGAGATACAAGGAACTGTGGTTCTTGTTTTCCAACCAGCAGAGGAAGGAGGTGGAGGGGCTAAGAAAATTTTAGATGCTGGAGCATTAGAAAATGTGACTGCTATCTTTGGATTGCATGTGGCACCTAACATTCCAATAGGTGAAGTGGCCTCTAAGTCTGGTCAAATGTCTGCAGGAAGTGGGGTCTTTGAAGCAATAATAAGTGGAATGGGAGGCCATGGAGCTTTTCCTCAACATTCTATAGACCCCATATTGGCAGCTTCTAATGTGATTATTAGCTTACAACACCTTGTTTCTCGTGAGGCTGATCCTCTAGACCCCCAGGTTGTGACGGTTGGAAAGTTCCACGGAGGTGATGCATTCAATGTTATTCCAGATTCTGTCACAATTGGTGGCACCTTCCGAGCTTTATCTAAAGAAAGCTTCAAGCAACTAAGACAGCGCATTGAGCAGGTTATCACTGGGCAAGCTGCTGTGCAGAGGTGCAATGCAACTATTAGCTTCCTTGATGATGTGAAACCTTCCTATCCTCCAATTGTAAATGATGGTGATTTGCACAAGCATTTTCATAATGTTGCAGTGGATTTGCTTGGCATCAATAAAGTTAACATTGACATGCAACCAGTTATGGGAGCTGAAGATTTTGCATTCTATCAAGAGGTCATACCTGGCTACTTTTTCATGCTTGGAATGAAGAATTCCTCACATAAACGGGCTCAGTTGTTACACTCACCTTATCTTGAAATCAATGAAGATGGACTTCCTTATGGGGCTGCACTTCATGCATCATTGGCAACTAGTTATCTTCAAAAATATCAGCAGGAGGATGTACCCGGGGTAGAGGGGAAGCATCATGATGAATTATGA 1347 0.4291 MSFFKCFHLFIIIFHVFAATPIFPSTHSSPSTPNQFITNFLDTAMKPEVFDWMVKIRRKIHEYPELLYEEFETSELIRAELDKLGIPYRHPVAVTGVIGFIGTGRSPYVAIRADMDALAMQELVEWEHKSKVPGKMHACGHDAHVTMLLGAAKILKEHEKEIQGTVVLVFQPAEEGGGGAKKILDAGALENVTAIFGLHVAPNIPIGEVASKSGQMSAGSGVFEAIISGMGGHGAFPQHSIDPILAASNVIISLQHLVSREADPLDPQVVTVGKFHGGDAFNVIPDSVTIGGTFRALSKESFKQLRQRIEQVITGQAAVQRCNATISFLDDVKPSYPPIVNDGDLHKHFHNVAVDLLGINKVNIDMQPVMGAEDFAFYQEVIPGYFFMLGMKNSSHKRAQLLHSPYLEINEDGLPYGAALHASLATSYLQKYQQEDVPGVEGKHHDEL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02053 448 CDD M20_IAA_Hyd 53 429 IPR044757 GO:0009850|GO:0016787
Rops4g02053 448 Gene3D - 218 336 - -
Rops4g02053 448 SUPERFAMILY Bacterial exopeptidase dimerisation domain 219 327 IPR036264 -
Rops4g02053 448 Pfam Peptidase family M20/M25/M40 110 425 IPR002933 GO:0016787
Rops4g02053 448 Pfam Peptidase dimerisation domain 220 315 IPR011650 -
Rops4g02053 448 Gene3D Zn peptidases 53 413 - -
Rops4g02053 448 SUPERFAMILY Zn-dependent exopeptidases 48 430 - -
Rops4g02053 448 FunFam N-acetyldiaminopimelate deacetylase 218 336 - -
Rops4g02053 448 NCBIfam amidohydrolase 53 416 IPR017439 GO:0016787
Rops4g02053 448 PANTHER PEPTIDASE M20 FAMILY MEMBER 30 435 IPR017439 GO:0016787
Rops4g02053 448 PIRSF Amidohydrol_AmhX 39 433 IPR017439 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02053 Rops-Chr4 46859411 46862440 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02053 K21604 - gmx:121172631 687.182