Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02041 ATGGGCCGCATTAGAGCGTTTCGTTTCGTTTCGTTTCGTTTTGCCCTTTCTTCAAGCCAAGCTCTAAACTCTTTGTTCCTTTCTTCTTCTCACTTCCTTCCCTTCCCTTCCCTTCTCGATCCTTCTACAACCATGATTACAGTGAGCGTAAAATGGCAAAAGGAGCTTTTCAAAGATGTAGAAATTGATACTACCCAGCCCCCTTATGTTTTTAAGTGCCAATTGTATGATCTGACAGGGGTACCTCCTGAAAGACAAAAAATTATGGTCAAGGGTGGTCTTTTAAAGGATGATGCTGATTGGTCAACATTAGGCGTGAAAGCGGGTCAAAAGCTAATGATGATGGGAACAGCTGATGAAATTGTCAAGTCTCCGGAGAAGGGAACTGTTTTTGTTGAAGATCTTCCCGAAGAAGAACAAGTGGTTGCTGTTGGACATACTGCTGGTCTTTTCAACTTGGGAAATACCTGTTATATGAACTCAACATTACAATGCCTCCATTCTGTGCCAGACTTGAAGTCTGCTTTGCTTAAGTACTCACATTCAGGACGAAACAATGATGTTGATCAGTCCTCTCACATGTTGACAATTGCAACCCGTGATTTATTCAATGAGCTTGATAAAAGTGTCAAGCCAGTGGCGCCAATGCAATTTTGGATGGTATTGCGGAAAAAGTATCCTCAATTTGGCCAGCTGCATAATGGAGTGTTCATGCAACAGGATGCTGAAGAATGCTGGACACAACTTTTATACACACTTTCTCAGTCTCTCAGATCCCCTGGATCTAGTGAAAATCCTGATGCTGTGAAGGCCCTTTTTGGCATAGACCTTGTTAGCAGGATTTATTGCCAAGAGAGTAATGAAGAAAGCTCAGAAGCAGAATCTGTTTATTCACTTAAATGCCACATATCACATGAGGTGAACCATTTGCATGAAGGACTAAAACATGGGTTAAAATCAGAGTTGGAGAAGGCTTCCCCTGCTTTGGGTCGTAGTGCTACCTACTTGAAGGAATCACGCATCAATGCCCTGCCAAGGTACTTAACTGTTCAGTTCGTTCGTTTTTTTTGGAAGAGGGAATCAAACCAAAAGGCTAAGATTTTGCGGAAAGTGGATTATCCTCTGGAGTTGGATGTTTATGATCTTTGTTCTGATGATCTTCGTAAAAAATTGGAAGCTCCTAGACAGAGTCTAAGAAATGAGGAAGGGAAAAGGCTTGGTCTGAAAGTGAATGAGAAGAACTCTGTTCACAAAGAAACTGATGTAAAAATGTCCGATGCTGAGGGATCATCAAATGGAGGAGGGGAGCCATCTGTGGCTCCAATGGAGGAAGGTGAAAAAGAAACACACATGACTGGAATTTATGATTTGGTTGCTGTATTGACCCACAAGGGTAGAAGTGCTGATTCAGGACATTATGTTGGTTGGGTCAAGCAAGAAAATGGCAAATGGATAGAGTTTGATGATGACAATCCCAAACCAAGAGTTGAAGATGACATCACTAGACTATCCGGAGGAGGTGATTGGCATATGGCGTATATAATCATGTACAAGGCTCGTGTTGTATCGGTGTAA 1575 0.4203 MGRIRAFRFVSFRFALSSSQALNSLFLSSSHFLPFPSLLDPSTTMITVSVKWQKELFKDVEIDTTQPPYVFKCQLYDLTGVPPERQKIMVKGGLLKDDADWSTLGVKAGQKLMMMGTADEIVKSPEKGTVFVEDLPEEEQVVAVGHTAGLFNLGNTCYMNSTLQCLHSVPDLKSALLKYSHSGRNNDVDQSSHMLTIATRDLFNELDKSVKPVAPMQFWMVLRKKYPQFGQLHNGVFMQQDAEECWTQLLYTLSQSLRSPGSSENPDAVKALFGIDLVSRIYCQESNEESSEAESVYSLKCHISHEVNHLHEGLKHGLKSELEKASPALGRSATYLKESRINALPRYLTVQFVRFFWKRESNQKAKILRKVDYPLELDVYDLCSDDLRKKLEAPRQSLRNEEGKRLGLKVNEKNSVHKETDVKMSDAEGSSNGGGEPSVAPMEEGEKETHMTGIYDLVAVLTHKGRSADSGHYVGWVKQENGKWIEFDDDNPKPRVEDDITRLSGGGDWHMAYIIMYKARVVSV* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02041 524 FunFam Ubiquitin carboxyl-terminal hydrolase 14 141 524 - -
Rops4g02041 524 ProSiteProfiles Ubiquitin domain profile. 46 115 IPR000626 GO:0005515
Rops4g02041 524 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 149 164 IPR018200 GO:0004843|GO:0006511
Rops4g02041 524 Pfam Ubiquitin carboxyl-terminal hydrolase 149 517 IPR001394 GO:0004843|GO:0016579
Rops4g02041 524 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 148 520 IPR028889 -
Rops4g02041 524 CDD Ubl_USP14_like 45 119 - -
Rops4g02041 524 SUPERFAMILY Ubiquitin-like 42 134 IPR029071 -
Rops4g02041 524 CDD Peptidase_C19A 149 518 - -
Rops4g02041 524 Gene3D - 44 117 - -
Rops4g02041 524 MobiDBLite consensus disorder prediction 397 446 - -
Rops4g02041 524 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 455 473 IPR018200 GO:0004843|GO:0006511
Rops4g02041 524 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 44 522 IPR044635 GO:0004843|GO:0016579|GO:0043161
Rops4g02041 524 Pfam Ubiquitin family 46 117 IPR000626 GO:0005515
Rops4g02041 524 ProSitePatterns Ubiquitin domain signature. 72 97 IPR019954 -
Rops4g02041 524 SMART ubq_7 46 117 IPR000626 GO:0005515
Rops4g02041 524 FunFam Ubiquitin carboxyl-terminal hydrolase 14 45 117 - -
Rops4g02041 524 SUPERFAMILY Cysteine proteinases 146 518 IPR038765 -
Rops4g02041 524 Gene3D Cysteine proteinases 142 523 - -
Rops4g02041 524 MobiDBLite consensus disorder prediction 397 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02041 Rops-Chr4 46720524 46735544 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02041 148 517 Miscellaneous Gene Families AT2G24640 22.108 6.10e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02041 K11843 - gmx:100787481 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02041 4 46720524 46735544 Rops4g02041 4 46720524 46735544 ECH