Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02021 ATGGCTCAGCAGCCGTTCGATCCGTATTACCTTTACCAACAAGATGAACGGAGCAACATCAACACGCTCTTCGTCTCCGGTCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAACCTCTTCCGCCGCCGTCCCGGCTTCGACTCTTGCCAGCTCAAATACACCGGCCGCGCCAACCAGGTCGTGGCATTTGCTACGTTTTTCAACCATCAATCAGCAATGGCAGCATTGCACGCCCTCAATGGTGTGAAATTTGATCCTCAAACTGGATCTGTTTTACATATTGAACTTGCCAGGTCAAACTCTCGGAGGAAGCGTAAACCAGGTGGTGGAGCCTATGTGGTTATAGATAAAAGGACAAAAGGGGAGGCCAATGTTCAGGGATCTTCGAGTGATGATGGTGATGGTGATGGCGAAAGTGACCCTGATGAACCATCGGAAAGTGGCGACAACCATGGTGATTTGGCAACCATGCAAAGTTGTGAGACTGCTGTTGGTTCTGACAATGCTGCACCTGTGGCAAGTGAGCAACATGAAAAGGGTGGTGATGGAGGACCATGTTCCACTCTCTTTATTGCAAATCTTGGTCCAAACTGCACTGAGGAAGAATTGAAGCAAGCTTTTTCTGTGTATACTGGATTCAACATGGTCAAAATACGTTCTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTTGAGGAAATTGATCAAGCTGCTAAGGTCATGGAGGAGCTCCAGGGAAGCTTGCTTCCATCATCTGATCGGGGTGGCATGCACCTAGAATATGCAAGGTCTAAAATGAGGAAGCATTAG 813 0.4846 MAQQPFDPYYLYQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQTGSVLHIELARSNSRRKRKPGGGAYVVIDKRTKGEANVQGSSSDDGDGDGESDPDEPSESGDNHGDLATMQSCETAVGSDNAAPVASEQHEKGGDGGPCSTLFIANLGPNCTEEELKQAFSVYTGFNMVKIRSRGGMPVAFADFEEIDQAAKVMEELQGSLLPSSDRGGMHLEYARSKMRKH* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02021 270 Gene3D - 16 103 IPR012677 -
Rops4g02021 270 SMART rrm1_1 189 261 IPR000504 GO:0003723
Rops4g02021 270 SMART rrm1_1 22 93 IPR000504 GO:0003723
Rops4g02021 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 86 IPR000504 GO:0003723
Rops4g02021 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 251 IPR000504 GO:0003723
Rops4g02021 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 100 IPR000504 GO:0003723
Rops4g02021 270 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 151 266 - -
Rops4g02021 270 MobiDBLite consensus disorder prediction 118 155 - -
Rops4g02021 270 FunFam RNA-binding protein with multiple splicing 180 270 - -
Rops4g02021 270 Gene3D - 183 270 IPR012677 -
Rops4g02021 270 FunFam RNA-binding protein with multiple splicing 2 18 108 - -
Rops4g02021 270 SUPERFAMILY RNA-binding domain, RBD 21 250 IPR035979 GO:0003676
Rops4g02021 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02021 Rops-Chr4 46333227 46337145 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02021 - - mtr:25500436 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02021 4 46333227 46337145 Rops4g02021 4 46333227 46337145 ECH