Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02018 ATGGACTTCCCCGATAACTCTCTCTCTCTGAGATCGAGCTTGACATTTGGCGAGACACTCTGTGCGGTGTTCATTCCTCTCATTGGAATCGCTGAAGCATTGTTTTTCTCCTTAGCTGGTTGCTTCGATTTCCATAATCCTTCGAATAACAAGAACAAGAACAAGAACATCTCTTCTTCTACCTTCGATGATATTCTCACTCTCGCCAATGACTCTCCCTTTACTGTTAATGAAATCGAGGCGTTGCATGAGTTGTACAAGAAGTTGAGTTGTTCAATCATTGATGATGGCCTCATTCACAAGGAAGAGCTCACATTGGCATTATTGAAGACTGCAGCTGGCGAGAATCTTTTCCTTGATAGGGTGTTCGATGTCTTTGATGAGAAAAAAAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTTACACGCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAGCGAGAAGAAGTTAAGCAAATGGTGATTGCCATTTTGTCAGAATGTGGCATGGATCTGGAAGATGAAGTCGTTGAAACCATTATTGATAAGACATTTCAAGATGCTGATACTGACAAGGATGATAAGATAAGTAAAGAAGAATGGAAGGCATTTGTCACTCGGCAGCCAACACTCTTGAAGCACCTGACTCTTCCTCATCTGAAGGACGTCACCACAGTATTTACCAGTTTCATTTTCAACACCGAAGTTGATGATTCGCACTGGCAAGTCAATGGCTATCATAAACATTAA 807 0.4064 MDFPDNSLSLRSSLTFGETLCAVFIPLIGIAEALFFSLAGCFDFHNPSNNKNKNKNISSSTFDDILTLANDSPFTVNEIEALHELYKKLSCSIIDDGLIHKEELTLALLKTAAGENLFLDRVFDVFDEKKNGVIEFEEFVHALSVFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVKQMVIAILSECGMDLEDEVVETIIDKTFQDADTDKDDKISKEEWKAFVTRQPTLLKHLTLPHLKDVTTVFTSFIFNTEVDDSHWQVNGYHKH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02018 268 SUPERFAMILY EF-hand 68 248 IPR011992 -
Rops4g02018 268 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Rops4g02018 268 CDD EFh 155 225 IPR002048 GO:0005509
Rops4g02018 268 ProSiteProfiles EF-hand calcium-binding domain profile. 195 230 IPR002048 GO:0005509
Rops4g02018 268 ProSitePatterns EF-hand calcium-binding domain. 208 220 IPR018247 -
Rops4g02018 268 FunFam calcineurin B-like protein 3 64 257 - -
Rops4g02018 268 Pfam EF hand 119 144 IPR002048 GO:0005509
Rops4g02018 268 PANTHER CALCINEURIN B 52 258 IPR045198 GO:0005509|GO:0019722|GO:0019900
Rops4g02018 268 SMART efh_1 118 146 IPR002048 GO:0005509
Rops4g02018 268 SMART efh_1 199 227 IPR002048 GO:0005509
Rops4g02018 268 SMART efh_1 155 183 IPR002048 GO:0005509
Rops4g02018 268 Pfam EF-hand domain pair 154 223 IPR002048 GO:0005509
Rops4g02018 268 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Rops4g02018 268 PRINTS Recoverin family signature 215 235 - -
Rops4g02018 268 PRINTS Recoverin family signature 122 143 - -
Rops4g02018 268 PRINTS Recoverin family signature 169 187 - -
Rops4g02018 268 Gene3D - 64 258 - -
Rops4g02018 268 CDD EFh 119 180 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02018 Rops-Chr4 46312311 46317493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02018 37 258 EF-hand Containing Proteins AT5G55990 55.856 1.66e-84 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02018 K06268 - gmx:100801943 431.409