Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g02013 ATGGGCTTCATCAAGCTCATAACTTTGAATGTGTTACTGTTGGTGGTGCTTCCATGTTCACTGATTGGTCATGCTTCAGCCTCTGTGTCCTATGACCACAAGGCTATCACCATCAATGGACAAAGAAGGATACTGCTCTCTGGGTCCATTCATTACCCCAGAAGCACCCCTGAGATGTGGCCAGATCTTATTCAAAAGGCCAAGGAAGGAGGTTTGGATGCGATTCAAACTTATGTTTTCTGGAATGGACATGAACCTTCACCTGGCAAGTACTATTTTGGGGGGAACTATGATCTGGTGAAGTTCATAAAGCTGGTGCAGCAAGCAGGACTCTATGTTCACTTGAGAATCGGTCCTTATGTATGTGCTGAGTGGAACTTCGGTGGTTTCCCTGTTTGGCTTAAGTACATTCCAGGCATCAGCTTCAGAACAGACAATGGACCGTTTAAGTTTCAAATGCAAAAATTTACCAAGAAGATTGTGGATATGATGAAAGCAGAAAGGTTATACGAGTCTCAGGGTGGTCCAATAATTCTATCCCAGATTGAAAATGAATATGGACCTATGGAGTATGAAATTGGTGCTCCTGGTAAAGCCTATTCTCAGTGGGCAGCACATATGGCTGTTGGACTTGGTACTGGGGTTCCATGGGTCATGTGCAAGCAAGATGATGCCCCTGATCCTGTTATTAATACTTGCAACGGCTTCTATTGTGATTATTTCTCTCCAAACAAAGCTTACAAACCAAAGATGTGGACAGAAGCTTGGACTGGCTGGTTTACTGAGTTTGGAGGGGCGGTTCCTCATAGACCTGCTGAGGACTTGGCATTTTCAGTTGCAAGGTTTATACAGAAAGGGGGATCATTTGTCAATTATTACATGTATCATGGTGGAACAAATTTTGGTAGAACTGCTGGTGGTCCCTTTATTGCCACGAGCTATGATTATGATGCACCTATTGATGAATATGGGCTGCCCAGGCATCCAAAGTGGGGTCATTTGAAGGATTTACATAGAGCAATAAAACTCTGTGAACCTGCTTTAGTTTCTGGAGATCCTACTGTAACTCGGCTTGGAAACTATCAGGAGGCTCATGTTTTTAAATCAAAGTCTGGAGCTTGTGCTGCATTCCTGGCAAACTATAACCCACGATCTTATGCAACAGTAGCATTGGGGAATCAGCATTACAACTTACCTCCTTGGTCTATAAGCATTCTTCCCAACTGCAAGCACACTGTTTATAACACTGCAAGGGTTGGTTCCCAAAGTGCACAGATGAAGATGACCCGTGTTCCTATTCATGGAGGACTCTCTTGGAAATCATTTAATGAAGAGACAACCACTACTGATGATAGTTCATTCACTGTGACTGGTCTGTTGGAGCAGATAAATACAACCAGAGATTTATCTGACTACTTGTGGTACTCCACAGATGTTGTGATAAATCCCAATGAAGGATTTTTGAGGAATGGAAAGAATCCTGTTCTTACAGTATTATCTGCTGGGCATGCTTTGCATGTTTTTGTTAATGGTCAGCTGTCAGGAACTGCATATGGAAGCTTAGATTTCCCCAAACTAACCTTTAGCGAGAGTGTGAAACTGAGAGCTGGTGTTAACAAAATCTCCCTTCTAAGTGTTGCAGTTGGGCTTCCGAATGTTGGTCCACATTTTGAAAGATGGAATGCTGGTGTTCTTGGCCCAATTACATTAAATGGTCTTAATGAGGGGAGAAGGGACTTAACGTGGCAGAAGTGGTCATACAAGGTTGGTCTTAAAGGTGAAGCCTTGAGTCTTCATTCTCTTAGTGGAAGTTCCTCTGTTGAGTGGCTTCAGGGCTATTTAGTTTCCCGAAGGCAGCCATTGACTTGGTACAAAACTACTTTTGACGCCCCAGCTGGAGTTGCACCATTGGCTTTAGACATGGGCAGCATGGGCAAAGGTCAAGTGTGGATAAATGGACAGAGTCTAGGTCGCTACTGGCCTGCTTATAAAGCATCTGGTTCTTGTGGTTCCTGTGACTATACAGGAACTTATAATGAAAAGAAATGCAGAAGTAACTGTGGCGAGGCTTCTCAAAGATGGTATCATGTTCCTCATTCATGGCTGAAACCAACTGGAAATTTATTGGTAGTGTTTGAGGAAATGGGTGGAGATCCGAATGGGATCTTTTTGGTTAGAAGGGATATAGATAGTGTCTGTGCTGATATTTATGAGTGGCAGCCAAATCTTGTAAGTTATCAGATGCAAGCTTCAGGAAAAGTCAAAACACCTGTGAGACCAAAAGCACATTTGTCATGTGGTCCTGGACAAAAAATCTCATCAATAAAATTTGCTAGCTTTGGCACTCCAGTAGGGTCTTGTGGTAACTACCATGAAGGTAGCTGTCATGCTCACAAGTCATATGATGCTTTTCAAAAGAATTGTGTGGGGCAGAACTCATGTGCAGTGACAGTGGCACCTGAAATTTTTGGAGGAGATCCATGTCCAAATGTCATGAAGAAACTCTCAGTGGAGGCAATTTGCACCTGA 2529 0.431 MGFIKLITLNVLLLVVLPCSLIGHASASVSYDHKAITINGQRRILLSGSIHYPRSTPEMWPDLIQKAKEGGLDAIQTYVFWNGHEPSPGKYYFGGNYDLVKFIKLVQQAGLYVHLRIGPYVCAEWNFGGFPVWLKYIPGISFRTDNGPFKFQMQKFTKKIVDMMKAERLYESQGGPIILSQIENEYGPMEYEIGAPGKAYSQWAAHMAVGLGTGVPWVMCKQDDAPDPVINTCNGFYCDYFSPNKAYKPKMWTEAWTGWFTEFGGAVPHRPAEDLAFSVARFIQKGGSFVNYYMYHGGTNFGRTAGGPFIATSYDYDAPIDEYGLPRHPKWGHLKDLHRAIKLCEPALVSGDPTVTRLGNYQEAHVFKSKSGACAAFLANYNPRSYATVALGNQHYNLPPWSISILPNCKHTVYNTARVGSQSAQMKMTRVPIHGGLSWKSFNEETTTTDDSSFTVTGLLEQINTTRDLSDYLWYSTDVVINPNEGFLRNGKNPVLTVLSAGHALHVFVNGQLSGTAYGSLDFPKLTFSESVKLRAGVNKISLLSVAVGLPNVGPHFERWNAGVLGPITLNGLNEGRRDLTWQKWSYKVGLKGEALSLHSLSGSSSVEWLQGYLVSRRQPLTWYKTTFDAPAGVAPLALDMGSMGKGQVWINGQSLGRYWPAYKASGSCGSCDYTGTYNEKKCRSNCGEASQRWYHVPHSWLKPTGNLLVVFEEMGGDPNGIFLVRRDIDSVCADIYEWQPNLVSYQMQASGKVKTPVRPKAHLSCGPGQKISSIKFASFGTPVGSCGNYHEGSCHAHKSYDAFQKNCVGQNSCAVTVAPEIFGGDPCPNVMKKLSVEAICT* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g02013 842 FunFam Beta-galactosidase 293 421 - -
Rops4g02013 842 PANTHER BETA-GALACTOSIDASE RELATED 20 743 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 646 662 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 308 324 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 39 56 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 115 134 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 251 266 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 172 187 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 288 303 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 619 633 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 PRINTS Glycosyl hydrolase family 35 signature 60 78 IPR001944 GO:0004553|GO:0005975
Rops4g02013 842 FunFam Beta-galactosidase 592 733 - -
Rops4g02013 842 SUPERFAMILY Galactose-binding domain-like 583 750 IPR008979 -
Rops4g02013 842 Gene3D - 747 842 IPR043159 -
Rops4g02013 842 Pfam Glycosyl hydrolases family 35 36 340 IPR031330 -
Rops4g02013 842 ProSiteProfiles SUEL-type lectin domain profile. 756 842 IPR000922 GO:0030246
Rops4g02013 842 FunFam Beta-galactosidase 24 344 - -
Rops4g02013 842 Pfam Beta-sandwich domain in beta galactosidase 348 419 IPR041392 -
Rops4g02013 842 CDD Gal_Rha_Lectin_BGal 759 841 - -
Rops4g02013 842 Gene3D Glycosidases 23 344 - -
Rops4g02013 842 FunFam Beta-galactosidase 447 584 - -
Rops4g02013 842 SUPERFAMILY Galactose-binding domain-like 403 574 IPR008979 -
Rops4g02013 842 Pfam Galactose binding lectin domain 764 841 IPR000922 GO:0030246
Rops4g02013 842 FunFam Beta-galactosidase 752 842 - -
Rops4g02013 842 Gene3D - 601 733 - -
Rops4g02013 842 SUPERFAMILY (Trans)glycosidases 28 345 IPR017853 -
Rops4g02013 842 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 174 186 IPR019801 GO:0004553|GO:0005975
Rops4g02013 842 Gene3D - 449 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g02013 Rops-Chr4 46228137 46234855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g02013 11 842 Glycoside Hydrolase AT3G13750 81.250 0.0 1437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g02013 - - gmx:100785688 1649.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g02013 4 46228137 46234855 Rops4g02013 4 46228137 46234855 ECH