Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01976 ATGTATCGATTGGTTTCTAAAGTAGCTTCCTCCATCGCTTCAAACACCTCAAAGAACAACAACCTCGTACGACTAGGACCGGTATGTAGTGGGGTATATTCAAGCAGAAATTATGTGACCAAAAATATCAACTTTGGAGTTGGGGCTCGTGCTGCTATACTGCAGGGAGTTTCTGAAGTTGCTGAGGCTGTTAAAGTTACCATGGGACCCAAGGGTCGCAATGTGATAATTGAGAAAAGCCGTGGAAATCCCAGGGTCACAAAGGATGGTGTGACTGTAGCCAAAAGTATCAAATTTAAAGACAAAGCAAAAAATGTTGGTGCAGATCTCGTCAAGCAGGTGGCTAAGGCTACCAACACTGCTGCTGGAGACGGTACAACTTGTGCAACTGTTTTGACTCAGGCAATACTCACAGAAGGATGCAAATCAATTGCTGCTGGCGTAAACGTCATGGATTTGCGTAATGGAATAAATAAGGCAGTGGATGCTGTAATCACTGATTTAAAAAGCAGGGCATTAATGATAAGTACACCAGAAGAGATAACCCAGGTTGGAACTATATCTGCAAATGGGGATCGTGATATTGGAGAATTGATAGCAAGGGCAATGGAGAAAGTTGGGAAGGAAGGAGTCATCACTGTTGCTGATGGGAATACTTTGGATAATGAGTTGGAAGTGGTAGAAGGGATGAAGTTAACTAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTGAATTGGAGAACCCCCTTATCCTCATCCATGACAAGAAAATTTCAGACATGAATTCACTGTTGAAAATATTGGAGCTGGCAGTAACGAAAACAAGACCACTCCTAGTTGTTGCAGAAGATGTTGAGAGTGATGCATTGGCTTTGCTCATACTTAACAAGCATCATGCTGGGCTTAAGGTTTGTGCCATAAAAGCTCCTGGCTTTGGGGATAATAGAAGAGCAAGTCTAGATGATCTTGCAATTCTTACTGGAGGAGAGGTCATTACAGAAGATCGAGGTTTGACTCTTGACAAATTCCAACCAGAAATGCTTGGCACCGCAAAAAAGGTTACCGTCTCCATTGATGACACTATCATTCTACATGGTGGTGGGGACAAGAAGCTCATTGAAGAGAGATGTGAGCAGCTGAGGACAGCTATGGAGAAGAGTTCTGCGGCGTTTGATAAAGAAAAAGCACAAGAACGGCTATCAAAACTCTCTGGTGGTGTGGCTGTTTTCAAAGTTGGGGGAGCTAGTGAGGCAGAAGTTGGGGAAAGAAAAGATAGAGTGACAGATGCGTTAAATGCCACAAGAGCAGCTGTGGAGGAGGGTATTGTTCCAGGTGGTGGAGTTGCTCTCTTATATGCTACCAAAGTCTTGGAGAACGTTCAAACTCGAAACGAGGATGACAAAAGAGGAGTACAGATTATTCAGAATGCACTCAAGGCACCTACATTTACAATAGCATCAAATGCTGGTTATGATGGTGCCTTGGTTCACAGCAAATTGTTGGAACAAGATGATCATAATTTGGGTTTTGATGCTGCTAAGGGTGCCTATGTTGATATGGTGAAGGCTGGAATTATAGATCCTCTCAAAGTTGTTATAACAGCTTTGGTAGATGCTGCCAGTGTATCATTGCTACTAACAACAACCGAGGCAACTGTGGTGGATAATCCAAATGACAAAAATAAACCTCCTAGCAGAGTGCCAGATATGGATGATCTGGACTTCTAA 1746 0.4278 MYRLVSKVASSIASNTSKNNNLVRLGPVCSGVYSSRNYVTKNINFGVGARAAILQGVSEVAEAVKVTMGPKGRNVIIEKSRGNPRVTKDGVTVAKSIKFKDKAKNVGADLVKQVAKATNTAAGDGTTCATVLTQAILTEGCKSIAAGVNVMDLRNGINKAVDAVITDLKSRALMISTPEEITQVGTISANGDRDIGELIARAMEKVGKEGVITVADGNTLDNELEVVEGMKLTRGYISPYFITDQKTQKCELENPLILIHDKKISDMNSLLKILELAVTKTRPLLVVAEDVESDALALLILNKHHAGLKVCAIKAPGFGDNRRASLDDLAILTGGEVITEDRGLTLDKFQPEMLGTAKKVTVSIDDTIILHGGGDKKLIEERCEQLRTAMEKSSAAFDKEKAQERLSKLSGGVAVFKVGGASEAEVGERKDRVTDALNATRAAVEEGIVPGGGVALLYATKVLENVQTRNEDDKRGVQIIQNALKAPTFTIASNAGYDGALVHSKLLEQDDHNLGFDAAKGAYVDMVKAGIIDPLKVVITALVDAASVSLLLTTTEATVVDNPNDKNKPPSRVPDMDDLDF* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01976 581 Pfam TCP-1/cpn60 chaperonin family 60 562 IPR002423 GO:0005524
Rops4g01976 581 CDD GroEL 41 561 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 Hamap Chaperonin GroEL [groEL]. 39 579 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 MobiDBLite consensus disorder prediction 561 581 - -
Rops4g01976 581 NCBIfam chaperonin GroEL 41 564 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 SUPERFAMILY GroEL-intermediate domain like 175 241 IPR027410 -
Rops4g01976 581 SUPERFAMILY GroEL equatorial domain-like 44 559 IPR027413 -
Rops4g01976 581 FunFam 60 kDa chaperonin 229 410 - -
Rops4g01976 581 Gene3D GroEL 229 410 IPR027409 -
Rops4g01976 581 PRINTS 60kDa chaperonin signature 435 456 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 PRINTS 60kDa chaperonin signature 387 412 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 PRINTS 60kDa chaperonin signature 120 147 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 PRINTS 60kDa chaperonin signature 64 90 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 PRINTS 60kDa chaperonin signature 305 328 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 SUPERFAMILY GroEL apical domain-like 221 413 IPR027409 -
Rops4g01976 581 ProSitePatterns Chaperonins cpn60 signature. 442 453 IPR018370 GO:0005524|GO:0006457
Rops4g01976 581 Gene3D - 43 560 IPR027413 -
Rops4g01976 581 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 40 570 IPR001844 GO:0042026|GO:0140662
Rops4g01976 581 Coils Coil 376 396 - -
Rops4g01976 581 Gene3D - 174 447 IPR027410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01976 Rops-Chr4 45530953 45543079 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01976 K04077 - gmx:100778935 1001.89