Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01971 ATGATTGACAGTTTCAACTCGACTGATTCAATTGAGTGCTGTGAAGCTGGAATGAAGAAAGCTGATCTTCAGCATCCTGGTCCTGTCTTGAAGAAGTCCAAAAACACAATTTTGGCTTCTCAAAATGTAGATAATTGTGAAGTGGCAGAAAGCCAGGACAGGCTTGGTGACATGCCAGATTGCCTTATTCATCATATTTTGTCATTCATGGAAACAAAGGATGCAATTCGAACTTGTGTTTTATCAAAAAGGTGGAGCTATCTTTGGGCTTCAATTCCCTGCCTGAACTTCAGCAGTAAATCATTCACACGGTTGGTTGATTTCAAGAAGTTTGTGCTGTGGGTTCTATCCCATCGTGATTCTTCTCACGTCAAAGTTCTTATTTACTATCGCTTTGGGGTAGATTATGCAACAGATCAATATCTATTGAATAAGGTCATTGAGTATGCAGCATCACATGGTGTTGAAGAAATCAGAATCAATCTTCGGGCTAAGACCTCGGGCAGTCCACCCATTGAAATTCCTTTATCTCTATTTTCTTGCCAATCCTTGAAAAGGCTTGAGTTAAAAGATTGCCATCCTACAAATGTCTCATCTCCTATAGGTTGCAAATCATTGGACATGTTGCATTTGGAACATTTCTCAATGTATCCTACTGCAGCTGACTTTTCAAATCCATTCGCAAGTTTGGCAGAACTTTTCTGTTTTACAGCATTGACAACTTTGCATCTAAATAGCTTCACCTTATGTTATACTGGAATTGACTGTCTGGATCCGTTTGCTAATTGTGTCAATTTGAAGAATTTGCACTTAAGTGAAATGTCCTTTAAGTCAGATTTGAACCCTAAGGATTTTGTGATATCTGCCCCCCAGCTCAGTAACTTGAGTCTAATGTGCAACCGCTTTAAATGTAAGATTGTAGTTGCTGCACCAAAGCTCACCAATTTCACTTACTTGTATTCCACACCTTGTGCCTTCTTTGAGTTTAATCTTCCTTCGTTGGATGGCTTGATAATTGATATTCATGAATCACATGATCGATTGGAAAAAATTCATCGAAAGAAAAGAGAGGAGACTTTACATGGTTTGGTCAATATTTTACGGGGACGTCATAATGATGAAGCTGTTAATCTATCCTTCTGTACAGTTGCGGTTACTTGTGGGACTGCAGCCATGTTGAAGCCAGAATGTTTATCTAATAGTAAATTGAAGTCATTGAACTTTGGTGTGGGATCAACATATAAAATCTTCATCAACAACCTCGACCATATAACTGCCTACTTCCGCAATTGCTCTCAGCATGCAGACTTCGAGATTGTGACTGTTTAG 1329 0.3898 MIDSFNSTDSIECCEAGMKKADLQHPGPVLKKSKNTILASQNVDNCEVAESQDRLGDMPDCLIHHILSFMETKDAIRTCVLSKRWSYLWASIPCLNFSSKSFTRLVDFKKFVLWVLSHRDSSHVKVLIYYRFGVDYATDQYLLNKVIEYAASHGVEEIRINLRAKTSGSPPIEIPLSLFSCQSLKRLELKDCHPTNVSSPIGCKSLDMLHLEHFSMYPTAADFSNPFASLAELFCFTALTTLHLNSFTLCYTGIDCLDPFANCVNLKNLHLSEMSFKSDLNPKDFVISAPQLSNLSLMCNRFKCKIVVAAPKLTNFTYLYSTPCAFFEFNLPSLDGLIIDIHESHDRLEKIHRKKREETLHGLVNILRGRHNDEAVNLSFCTVAVTCGTAAMLKPECLSNSKLKSLNFGVGSTYKIFINNLDHITAYFRNCSQHADFEIVTV* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01971 442 Gene3D - 40 95 - -
Rops4g01971 442 CDD F-box_AtFBL13-like 55 90 - -
Rops4g01971 442 Gene3D Ribonuclease Inhibitor 148 351 IPR032675 -
Rops4g01971 442 SUPERFAMILY L domain-like 172 329 - -
Rops4g01971 442 SUPERFAMILY F-box domain 51 108 IPR036047 GO:0005515
Rops4g01971 442 ProSiteProfiles F-box domain profile. 52 105 IPR001810 GO:0005515
Rops4g01971 442 PANTHER OS11G0201299 PROTEIN 236 408 - -
Rops4g01971 442 SMART fbox_2 58 98 IPR001810 GO:0005515
Rops4g01971 442 Pfam F-box domain 57 92 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01971 Rops-Chr4 45443854 45457114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01971 48 216 EF-hand Containing Proteins AT5G41840 31.053 1.36e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01971 - - vun:114167379 786.178