Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01968 ATGACTACCTCTACTATTTGGATGTTGATGTTGGCTCTCTTTTCTGTCATTTATGGCAGTGTTGTTCTTCCTATTGAAGCTACCCACCATGTTTATAGGAATCTTCAGAGTTTGTCTTACAGAACTGCTTATCACTTCCAACCTCCCAAGAATTGGATAAATGATCCTAATGGACCAATGAGATACAAAGGAATTTATCATCTGTTCTATCAATACAATCCCAAAGGTGCAGTTTGGGGAAACATTGTGTGGGCACACTCTGTATCAACGGATCTCGTGAATTGGACCCCACTAGATCCTGCCATCTTCCCATCTCAACCGTCAGATATAAATGGCTGCTGGTCAGGCTCAGCTACATTGCTTCAAGGGAACAAACCAGCCATTTTATACACAGGAATTGACCCCATGAACCATCAAGTTCAAAACTTGGCCTACCCCAAAAATTTATCTGACCCTTATCTTAGGGAATGGGTTAAGTCACCTAAAAATCCTCTAATGGCACCAACTATTGCTAATAAGATCAATGCAAGTTCATTTAGAGACCCTACCACTGCTTGGCTAGGCAAAGATGGGCATTGGAGGGTGCTAGTTGGGAGCAAAAGAAACACTAGGGGAATGGCAATTTTGTATAGGAGCAAAGACTTTGTTAATTGGATTAAAGCCAAACATCCATTACATTCAGCTAAAGGCACTGGAATGTGGGAGTGCCCTGATTTCTTTCCAGTTTTGAATGATGGTCCATTGGGTGTTGACACATCTGTGAATGGTGATCATGTTAGGCATGTGCTCAAGGTTAGCTTGGATGATAAGAAACATGATTACTATTTGATTGGAACCTATAATGCTGCCAAAGACATTTTTATCCCTGATAAAGGGTTTGAGGATAATGCATCAGTTTTACGATATGATTATGGAAAATACTATGCCTCAAAAACTTTCTTTGATGATGGAAAGAACAGAAGGATTTTGCTAGGTTGGGTCAACGAATCCTCAAGTGTTCCGGATGATATCAAGAAAGGATGGTCTGGAATCCATACAATTCCAAGGGCTATATGGCTGCATAAATCTGGTAAACAATTGGTACAATGGCCAGTGGTGGAAATTGAAAAGCTACGTACAAACCCAGTCAACTGGCCCACCAAAGTACTCAAAGGGGGTGAGCTTCTTCAAATTAATGGTGTCACAGCAGCACAGGCTGATGTTGAAATTTCATTTGAAGTGAATAAGTTTGAAGAGGCTGAAGTATTGGACTATTGGACCGACCCTCAAATTCTGTGTAGTAGAAAGGGTTCATCCTTTAGAAGTGGATTGGGACCATTTGGTCTACTAGTTTTGGCTTCAAAGGGATTGCAAGAGTACACATCAGTGTTCTTTAGAATATTCAGATACCAACACAAAAATTTGGTGCTCTTGTGCAGTGACCAAAGCAGGTCTTCCTTGAATAAAGATAATGATTTGACCACTTATGGAACTTTTGTGGATGTCGACATTCTTCATGAGAAGCTGTCATTGAGAAGCTTGATTGATCACTCTGTGGCAGAGAGTTTCGGAGGAGAAGGAAAGGCTTGCATCACAGCCAGAGTTTATCCCACATTGGCAATTAATGATCAAGCACAACTTTATGCTTTCAATAATGGAACTGCTGATGTCAAGATCACAAGATTGAGTGCTTGGAGCATGAAGAAAGCACCATAA 1695 0.4077 MTTSTIWMLMLALFSVIYGSVVLPIEATHHVYRNLQSLSYRTAYHFQPPKNWINDPNGPMRYKGIYHLFYQYNPKGAVWGNIVWAHSVSTDLVNWTPLDPAIFPSQPSDINGCWSGSATLLQGNKPAILYTGIDPMNHQVQNLAYPKNLSDPYLREWVKSPKNPLMAPTIANKINASSFRDPTTAWLGKDGHWRVLVGSKRNTRGMAILYRSKDFVNWIKAKHPLHSAKGTGMWECPDFFPVLNDGPLGVDTSVNGDHVRHVLKVSLDDKKHDYYLIGTYNAAKDIFIPDKGFEDNASVLRYDYGKYYASKTFFDDGKNRRILLGWVNESSSVPDDIKKGWSGIHTIPRAIWLHKSGKQLVQWPVVEIEKLRTNPVNWPTKVLKGGELLQINGVTAAQADVEISFEVNKFEEAEVLDYWTDPQILCSRKGSSFRSGLGPFGLLVLASKGLQEYTSVFFRIFRYQHKNLVLLCSDQSRSSLNKDNDLTTYGTFVDVDILHEKLSLRSLIDHSVAESFGGEGKACITARVYPTLAINDQAQLYAFNNGTADVKITRLSAWSMKKAP* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01968 564 SUPERFAMILY Concanavalin A-like lectins/glucanases 364 562 IPR013320 -
Rops4g01968 564 SMART glyco_32 45 520 IPR001362 GO:0004553|GO:0005975
Rops4g01968 564 Pfam Glycosyl hydrolases family 32 N-terminal domain 45 364 IPR013148 -
Rops4g01968 564 Pfam Glycosyl hydrolases family 32 C terminal 367 559 IPR013189 -
Rops4g01968 564 ProSitePatterns Glycosyl hydrolases family 32 active site. 45 58 IPR018053 GO:0004553|GO:0005975
Rops4g01968 564 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 49 376 - -
Rops4g01968 564 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 376 560 - -
Rops4g01968 564 Gene3D Glycosyl hydrolase domain; family 43 49 374 IPR023296 -
Rops4g01968 564 CDD GH32_Fruct1-like 51 353 - -
Rops4g01968 564 SUPERFAMILY Arabinanase/levansucrase/invertase 39 365 IPR023296 -
Rops4g01968 564 Gene3D - 375 560 - -
Rops4g01968 564 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 34 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01968 Rops-Chr4 45394030 45399248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01968 60 563 Glycoside Hydrolase AT3G13790 66.797 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01968 K01193 - gmx:100776791 999.193