Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01911 ATGTTTGGAATCTTTGACAAGGGTCATAAGATCAAGGGCACAGTGGTGTTGATGCCCAAAAATGTCTTAGACTTCAACGCCATAACCTCGGTTGCTAGTGGCGACGGTATCGTTGACAAGGCCGGGAATATCGTCGGAGGTGCCATCGGCCTTGGCGTCGGTGCGTTGGGCCAAGTAGTGGATGGTGCCACTGCCTTCTTAGGCCGCAACATCGCTCTACAGTTGATCAGTGCTACCAAGACTGATGCACATGGAAATGGAAAAGTTGGAAAGGAAACCTTCTTGGACAAACATCTTCCAACTTTGCCAACACTGGGAGCAAGGCAAGATGGATTCAGTATCTACTTTGAATACGATGCTGATTTTGGAATTCCAGGAGCATTTTACATCAAAAACTATATGCAAGCTGAGTTATTCCTTGTCAGTGTGACTCTGGAAGACATTCCTAATCATGGAACCATTCACTTTGATTGTAAATCATGGGTTTACAATGCAAAATGTTACAAAAGTCCCAGAATTTTCTTTACCAATAATACATATCTTCCAAATGAAACACCAGCTGCACTGGTAAAGTACAGAGCAGAAGAGTTGCTGAATCTAAGAGGAGATGGAACTGGGGAGCGCAAGGAATATGATAGGATTTATGATTATGCTGTCTATAATGATTTGGGCAATCCAGATGCTGGTCAAAAATTAGCTCGCCCAACCCTTGGAGGGTCTAGCAACTATCCCTACCCTCGTAGGGTTAGAACCGGTAGACAACCAACCAGGAAAGATCCTACTTGTGAGAAACCAGGCGAGATGTATGTTCCAAGAGATGAAAACTTTGGTCACTTGAAGTCATCGGATTTCCTTACATATGGAATAAAATCTTTGTCTCAGAATGTGATACCTTTGTTTAAATCTGTAATTTTTGATTTAAATTTCACCCCAAATGAGTTTGATAGCTTCGACGAAGTGCGTGGACTCTTTGAAGGTGGAATTAAGTTGCCTACAGATGTACTCAGCCAAATTAGCCCCTTACCCGTGCTCAAGGAAATATTTCGCACTGATGGTGAAAATGTCCTCAAGTTTCCACCACCTCATGTAATCAAAGTTAGCAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAGGTGATTGCTGGTGTAAACCCTTGTGTAATTCACCGTCTCCAAGAGTTCCCACCACAAAGCAAGCTAGATCCTGCACTTTATGGTGATCAAAGCAGTACAATAACAAAAGAACACTTGGAAATTAACCTTGCTGGGCTCACAGTAGATGAGGCACTTAATAGTCAGAGATTATTCGTATTAGATTATCATGATCCATTCATGATGTATTTGGAGAGGATAAACACAATTGCAAAGGCTTATGCCACCAGAACAATCTTTTTCTTGAAAGATGACGGGGCTTTGAAGCCACTTGCCATTGAATTAAGTCTGCCACATTCAAATGGAGTTAAGTTTGGTGCGGAAAGCAAAGTCATCTTACCTGCAAATGAAGGTGTTGAAAGCACAATTTGGCTTTTGGCAAAGGCTCATGTAATTGTAAATGACTCGGGCTATCACCAGCTCATGAGTCACTGGTTAAATACTCATGCAGTGATGGAGCCATTTGTCATAGCAACAAACCGACATCTCAGTGTGCTTCACCCCATTTATAAACTTTTATATCCTCATTATCGTGACACAATAAATATCAATGGACTTGCTCGACAATCCTTAATCAATGCAGGTGGCATTATTGAGCAATCATTTTTGCCTGGACCATATTCTATCGAAATGTCTTCAATTGTATACAAAAATTGGGTTTTCACAGACCAAGCATTACCAGCTGATCTTATCAAGAGAGGATTGGCAGTTGAGGACCCTTCTTCTCCCCATGGCCTTCGTCTTTTGATAGAGGACTACCCGTATGCTGTTGATGGACTGGAAATATGGGATGCTATTAAGACATGGGTCAATGACTATGTCTCCTTGTATTACCCAACAAATGAGGCAGTTCAAAAGGACACTGAACTACAAGCTTGGTGGAAGGAAGTTGTTGAGAAGGGTCATGGGGACTTGAAAGATAAGCCGTGGTGGCCTAAGATGCAAACTCTTGAAGATTTGGTTGAATCGTGCTCTATTATTATATGGACTGGTTCTGCTCTCCATGCAGCAGTTAATTTTGGACAATATCCTTATGGAGGTTATATCCTGAACCGTCCAACACTTAGCAGAAGATTGATCCCAGAGAAAGGAACTCCAGAATATGATGAGATGGTAAAAAGTCCTCAAAAGGCTTACTTGAGAACAATTACACCAAAATTCCAGACCCTTGTTGATATTTCAGTGATAGAGATATTATCAAGGCATGCTTCTGATGAGGTCTATCTTGGGGAGAGGGACAATCCAAACTGGACATCTGATACAAAGGCAGTAGAAGCCTTCAAAAGGTTTGGAACCAAGTTGGCTGAAATTGAAGGTAAAATCACAGGGAGGAACAACGATCCAAGTTTGAAAAACCGAATTGGACCAGTTCAACTGCCTTACACTTTGCTCCATCGTTCAAGTGAAGAAGGTTTAACTTTCAGAGGAATTCCCAATAGTATCTCTATTTAA 2610 0.4157 MFGIFDKGHKIKGTVVLMPKNVLDFNAITSVASGDGIVDKAGNIVGGAIGLGVGALGQVVDGATAFLGRNIALQLISATKTDAHGNGKVGKETFLDKHLPTLPTLGARQDGFSIYFEYDADFGIPGAFYIKNYMQAELFLVSVTLEDIPNHGTIHFDCKSWVYNAKCYKSPRIFFTNNTYLPNETPAALVKYRAEELLNLRGDGTGERKEYDRIYDYAVYNDLGNPDAGQKLARPTLGGSSNYPYPRRVRTGRQPTRKDPTCEKPGEMYVPRDENFGHLKSSDFLTYGIKSLSQNVIPLFKSVIFDLNFTPNEFDSFDEVRGLFEGGIKLPTDVLSQISPLPVLKEIFRTDGENVLKFPPPHVIKVSKSAWMTDEEFAREVIAGVNPCVIHRLQEFPPQSKLDPALYGDQSSTITKEHLEINLAGLTVDEALNSQRLFVLDYHDPFMMYLERINTIAKAYATRTIFFLKDDGALKPLAIELSLPHSNGVKFGAESKVILPANEGVESTIWLLAKAHVIVNDSGYHQLMSHWLNTHAVMEPFVIATNRHLSVLHPIYKLLYPHYRDTININGLARQSLINAGGIIEQSFLPGPYSIEMSSIVYKNWVFTDQALPADLIKRGLAVEDPSSPHGLRLLIEDYPYAVDGLEIWDAIKTWVNDYVSLYYPTNEAVQKDTELQAWWKEVVEKGHGDLKDKPWWPKMQTLEDLVESCSIIIWTGSALHAAVNFGQYPYGGYILNRPTLSRRLIPEKGTPEYDEMVKSPQKAYLRTITPKFQTLVDISVIEILSRHASDEVYLGERDNPNWTSDTKAVEAFKRFGTKLAEIEGKITGRNNDPSLKNRIGPVQLPYTLLHRSSEEGLTFRGIPNSISI* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01911 869 SMART LH2_4 9 177 IPR001024 GO:0005515
Rops4g01911 869 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 8 180 IPR036392 GO:0005515
Rops4g01911 869 ProSitePatterns Lipoxygenases iron-binding region signature 2. 552 562 IPR020834 GO:0016702|GO:0046872
Rops4g01911 869 Pfam PLAT/LH2 domain 83 175 IPR001024 GO:0005515
Rops4g01911 869 ProSitePatterns Lipoxygenases iron-binding region signature 1. 525 539 IPR020833 GO:0016702|GO:0046872
Rops4g01911 869 Gene3D - 280 368 IPR027433 -
Rops4g01911 869 Gene3D - 369 502 - -
Rops4g01911 869 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 179 869 IPR013819 GO:0016702|GO:0046872
Rops4g01911 869 Gene3D - 503 868 - -
Rops4g01911 869 FunFam Lipoxygenase 370 502 - -
Rops4g01911 869 CDD PLAT_LH2 9 177 IPR042057 -
Rops4g01911 869 Pfam Lipoxygenase 189 851 IPR013819 GO:0016702|GO:0046872
Rops4g01911 869 SUPERFAMILY Lipoxigenase 181 869 IPR036226 -
Rops4g01911 869 Gene3D - 181 279 - -
Rops4g01911 869 PRINTS Plant lipoxygenase signature 172 193 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 395 414 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 146 164 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 460 484 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 244 263 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 782 796 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 211 227 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 311 332 IPR001246 GO:0016491
Rops4g01911 869 PRINTS Plant lipoxygenase signature 356 372 IPR001246 GO:0016491
Rops4g01911 869 FunFam Lipoxygenase 504 868 - -
Rops4g01911 869 PRINTS Lipoxygenase signature 507 524 IPR013819 GO:0016702|GO:0046872
Rops4g01911 869 PRINTS Lipoxygenase signature 545 565 IPR013819 GO:0016702|GO:0046872
Rops4g01911 869 PRINTS Lipoxygenase signature 525 542 IPR013819 GO:0016702|GO:0046872
Rops4g01911 869 Gene3D PLAT/LH2 domain 1 180 - -
Rops4g01911 869 ProSiteProfiles PLAT domain profile. 53 176 IPR001024 GO:0005515
Rops4g01911 869 PANTHER LIPOXYGENASE 8 869 IPR000907 GO:0016702|GO:0034440|GO:0046872
Rops4g01911 869 FunFam Lipoxygenase 181 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01911 Rops-Chr4 44276205 44292514 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01911 10 869 Acyl Lipid Metabolism Gene Families AT1G55020 58.009 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01911 K15718 - gmx:547835 1414.05