Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01909 ATGGCATACGCATCGCATTTTCTCAATCACTCCAGAAAGTTGAGAAATGCTTCAAGCTTGGTAAACCATGAGCGTGCGCTTTTGGTTCGTTGGTTTTGCAGCGATGCTCAACCCTCTATCAACAGAAATCGAGATGTGTGGAAAACCCGATTCCATGACTGCGAGTCTTCAACAAGAAACAGTGTATCTGAGTCAGCCCCCAACTTTACAAAACTTTCATTTGGTACACAAAAGAGAAACTTCTCCATGTCTACCATGAAAAGGGGTTCCATTAATGGGTCTTTGTTCAATGGACAGATTTCACGAAGTTCACAGGTGCTGTCAAGGAGATGTTATGCATCTGCTTCAGATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCAACAATGACAGAGGGTAACATTGCAAGATGGTTGAAGAAAGAGGGTGATAAAGTTTCTCCTGGTGAAGTCCTCTGTGAAGTTGAAACTGATAAAGCTACAGTTGAAATGGAATGCATGGAGGAAGGTTATCTGGCCAAGATAATTCGCGGGGATGGGTCAAAAGAAATTCAAGTTGGTGAGGTAATTGCCGTAACTGTTGAAGATGAGGAAGATATTTCGAAGTTTAAAGATTACCAACCTTCTGCATCTGAACCTAGTGCTCCCCCTGCCAAAGAAACATCTGCCCCACCTCCACCAAAGAAAGAGGCAATAGAGGAGCCTGCACGAGGACCTGAGCCGAAGATTTCCAAACCCACTGCACCACCTTCATCTGGAGATCGCATATTCGCTAGTCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCTCTCTCTAGCATTAAAGGAACAGGATCTGAAGGGCTCATTGTCAAGGGTGACATTGACGATTACTTGGCTTCTGGTGTTAAAGAAGTTTCAGCACCCTCAAAGGCCAAGGTTGCAACAGATGCAGCATTGGATTATACCGACTTTCCTGTCTCTCAGATAAGGAAGATCACAGCTTCACGTCTATTATTATCAAAACAAACAATTCCTCATTACTATTTAACAGTAGATACATGTGTTGACAAACTCATGAGTTTGCGGACCAAACTTAATTCATTGCAAGAAGCCTCAGGTGGGGCCCGCATATCAGTTAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTCCGTAAAGTTCCTCAGTGTAACAGTTCATGGGCAAATGATTATATTCGTCAGTATCATAATGTGAATATTAATGTTGCAGTGCAGACTGATCAAGGACTCTTTGTTCCAGTCATCAGGGATGCGGACAAGAAAGGCCTCTCGGGAATAGGTGAAGAGGTCAAACAGTTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCACAAGATTATGAGGGAGGTACATTTACAGTGTCTAACTTGGGAGGGCCATTTGGAGTCAAACAGTTCTGTGCCATCATCAATCCACCTCAATCAGGCATTCTTGCAGTTGGATCCGCTGAAAGGAGGGTCGTCCCGGGTTCAGGTGGTGAAGAATTCAAGTTTGCTTCCTTCATGTCTGTGACCCTCAGCTGTGATCATCGTGTAATAGATGGTGCAATTGGTGCCGAATGGTTAAAAGTATTCAAAGGCTACATTGAAAATCCAGAATCCATGTTGTTGTAA 1653 0.438 MAYASHFLNHSRKLRNASSLVNHERALLVRWFCSDAQPSINRNRDVWKTRFHDCESSTRNSVSESAPNFTKLSFGTQKRNFSMSTMKRGSINGSLFNGQISRSSQVLSRRCYASASDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIIRGDGSKEIQVGEVIAVTVEDEEDISKFKDYQPSASEPSAPPAKETSAPPPPKKEAIEEPARGPEPKISKPTAPPSSGDRIFASPLARKLAEEKNVPLSSIKGTGSEGLIVKGDIDDYLASGVKEVSAPSKAKVATDAALDYTDFPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTKLNSLQEASGGARISVNDLVIKAAALALRKVPQCNSSWANDYIRQYHNVNINVAVQTDQGLFVPVIRDADKKGLSGIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAERRVVPGSGGEEFKFASFMSVTLSCDHRVIDGAIGAEWLKVFKGYIENPESMLL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01909 550 NCBIfam pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 123 550 IPR006257 GO:0004742|GO:0006090|GO:0045254
Rops4g01909 550 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 146 175 IPR003016 -
Rops4g01909 550 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 305 548 - -
Rops4g01909 550 SUPERFAMILY Single hybrid motif 120 215 IPR011053 -
Rops4g01909 550 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 253 298 IPR036625 GO:0016746
Rops4g01909 550 Gene3D - 249 301 IPR036625 GO:0016746
Rops4g01909 550 Pfam Biotin-requiring enzyme 123 195 IPR000089 -
Rops4g01909 550 ProSiteProfiles Biotinyl/lipoyl domain profile. 121 197 IPR000089 -
Rops4g01909 550 MobiDBLite consensus disorder prediction 229 243 - -
Rops4g01909 550 Pfam e3 binding domain 259 293 IPR004167 GO:0016746
Rops4g01909 550 Gene3D - 303 548 IPR023213 -
Rops4g01909 550 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 319 550 IPR001078 GO:0016746
Rops4g01909 550 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 260 297 IPR004167 GO:0016746
Rops4g01909 550 Gene3D - 116 222 - -
Rops4g01909 550 MobiDBLite consensus disorder prediction 208 259 - -
Rops4g01909 550 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 89 550 IPR045257 GO:0006086|GO:0045254
Rops4g01909 550 SUPERFAMILY CoA-dependent acyltransferases 319 550 - -
Rops4g01909 550 CDD lipoyl_domain 122 195 - -
Rops4g01909 550 FunFam Acetyltransferase component of pyruvate dehydrogenase complex 117 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01909 Rops-Chr4 44252997 44259123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01909 1 550 Acyl Lipid Metabolism Gene Families AT1G54220 67.514 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01909 K00627 - gmx:100778218 924.08