Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01863 ATGAATATGCAACAAGTTGGGCAGCCTAAATCATCTAATGGATATGGCCGTCGAAAATCTGAAAAAGAAGGGGCAACTAAGTCTGATAATAAGATGCCCTCTGGAAAATCAAATGCCAGCAGATTAACGAGTACAGTGACTGGCAGTAAAGGTAGTAGTTGTGAGAGTCCTTCACGTGATCGACTAGTATATTTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCTATATACTCTGGAATATTTCATGCAACAAATACTGACAAAGATTTTGGAATCATTTTGAAAATGGCTTGCTTGACAAAGGATGGCTCTTCACAAGGGCAGGGTTCTGGTGTAGAATTTGTCTGCAAAGCTCCTTCTAAGACTTTAATTATACCTGCCAAAGAACTTGTACAAGTCATAGCGAAGGATATTGCTGTTTCTAGAGATGGCCTTCATAGTGAATCTCAGTATGACATGCATCAGGAGATCATGGTTGATTCAGTAATATCTCAATCTCGTCATGTTGAGATAGGGAGAGAATTACAACGATGGGTACCTGATGAAGATGATCCACAATGCCCTGAACTGGAAAATATCTTTGATGGCCATTGGAATAGGGGGTGGGATCAGTTTGAAACAAATGAAATGTTGTTTGGCGTAAAAAGCACATTCAATGAGGATCTCTATACAACAAAGCTTGAAAAAGGGCCTCAGATGAGAGAATTGGAAAAGCAAGCTACAAGAATAGCAAGAGAAATTGAGGGTGAGGAGACCCAAGATCTTCATCTAGCAGAGGAAAGAGGCCTTTACCATGATGACTTTGATCTTGATGAAGAGACCAGATTCTCTTCAGTATATAGGGGTAAAGGTGTTGATGATAGTGGATATGATGAAGATGAGGACAAGCTGTTGGATTCTCACAATTCTGAAACGTTTGGTGATATATCTAGTTCAGTCATTAAGAGACCGGGTGAAATAAGTGGTGGAAAAGGCAACAATGGAGCTCAAACATGGTCAAATTTCTCCTCTGTGGACCACTTACAATCATCTCTGTCAAAAACTGGTGTGGATTTATGTCGCTCTAGTTCTTATGATCATGCTAAGCAGTTAGCGTCTGAACTCCCTGCCCAAAGTTACTCAAATTCAGATGGGGAAAGCAGGCTTCAGGATAACTCGGTTTCTGATCTACATGGAGCCAATGGTAACACCACAGAAGAAAATCAGATACAAACCGAGGAGGATGTCCAGCTGCCACAATCTGAGGATTTACAGTCATCACTCAACTTGAAGAAAGATGGCTCTGATAAAGGGGGATTATCTCCTAATGCCACTTCTTATGCCCCTTCTACTCATATTTTATCAAAGACTGATGAAAAAACTGGGTCACTTGGGGAGTTGACTGGGGGTTCAGCATCTGGCAAAGCTAATGGGGAAACAAAGTCTGTAAATTCACGTGGAAGACTAGGTAGTACCTCATCTGGTTCAGATTTTGGGGCAGGAGTGGCAACATCTTCTGGTCCTGGTCTGTCACCAAGTTCTTCAGTTGGTTCACTGTCTTCTGAAAGATCGACTCTGAATCCTAATGCCAAGGAATTCAAGCTCAACCCTAATGCGAAGAGTTTTATTCCGTCTCAAACACCTGTTAGGCCTCGGACCCCAGTGTCTGATGGTTCCTTCTATTTCCCAGCTAACGTATCCTCTGTACCAAGTATGCCAGCCATGCCCATGAGTGTTGGAGTTGGATTTGCTGGGCCACAACCTGTCATATATAATCCACAGGCAGCACAAATGTCATCCCAACCATATTTTCATCCGAATGGACCACAGTATGGGCAACTTCTTGGTCATCCTAGGCAAGTTTTATACATGCCGAGTTACCAACCTGAGACGCAGTACAAGGGACGGAATTATTGA 1917 0.4246 MNMQQVGQPKSSNGYGRRKSEKEGATKSDNKMPSGKSNASRLTSTVTGSKGSSCESPSRDRLVYLTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMACLTKDGSSQGQGSGVEFVCKAPSKTLIIPAKELVQVIAKDIAVSRDGLHSESQYDMHQEIMVDSVISQSRHVEIGRELQRWVPDEDDPQCPELENIFDGHWNRGWDQFETNEMLFGVKSTFNEDLYTTKLEKGPQMRELEKQATRIAREIEGEETQDLHLAEERGLYHDDFDLDEETRFSSVYRGKGVDDSGYDEDEDKLLDSHNSETFGDISSSVIKRPGEISGGKGNNGAQTWSNFSSVDHLQSSLSKTGVDLCRSSSYDHAKQLASELPAQSYSNSDGESRLQDNSVSDLHGANGNTTEENQIQTEEDVQLPQSEDLQSSLNLKKDGSDKGGLSPNATSYAPSTHILSKTDEKTGSLGELTGGSASGKANGETKSVNSRGRLGSTSSGSDFGAGVATSSGPGLSPSSSVGSLSSERSTLNPNAKEFKLNPNAKSFIPSQTPVRPRTPVSDGSFYFPANVSSVPSMPAMPMSVGVGFAGPQPVIYNPQAAQMSSQPYFHPNGPQYGQLLGHPRQVLYMPSYQPETQYKGRNY* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01863 638 PANTHER ATAXIN 2-RELATED 34 632 IPR045117 GO:0003723
Rops4g01863 638 SMART LsmAD_2 219 289 IPR009604 -
Rops4g01863 638 Gene3D - 66 121 - -
Rops4g01863 638 MobiDBLite consensus disorder prediction 30 57 - -
Rops4g01863 638 MobiDBLite consensus disorder prediction 374 554 - -
Rops4g01863 638 MobiDBLite consensus disorder prediction 288 338 - -
Rops4g01863 638 MobiDBLite consensus disorder prediction 439 553 - -
Rops4g01863 638 MobiDBLite consensus disorder prediction 288 309 - -
Rops4g01863 638 MobiDBLite consensus disorder prediction 15 29 - -
Rops4g01863 638 Coils Coil 240 260 - -
Rops4g01863 638 Pfam Ataxin 2 SM domain 59 143 IPR025852 -
Rops4g01863 638 Pfam LsmAD domain 219 288 IPR009604 -
Rops4g01863 638 MobiDBLite consensus disorder prediction 1 57 - -
Rops4g01863 638 MobiDBLite consensus disorder prediction 374 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01863 Rops-Chr4 43304240 43313909 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01863 - - gmx:100796073 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01863 4 43304240 43313909 Rops4g01863 4 43304240 43313909 ECH