Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01835 ATGGTTCTCATTCTTTTCCTCTTTGCTTTTTTTCTCTCATCCACTTCCCATGCTAATGCCTTTTGCATAGCAGACCTAACGGGTGCAAAAAGCCCTGAAGGCTATCCCTGCAAGCCACCTTCATCATTAACAGTGAATGACTTTGTGTTTTCTAACTTCAAAGCTGGAAACACCTCAAACTTTTTAAAAACTTCATTAACCCCTGCATTTGTTGAACAATTTCCAGGTGTTAATGGACTTGGCATCTCTGCAGCAAAGATGGACATAGATATTGGTGGTGTTGTCCCAATGCATTCTCATCCTGGTGCCAATGAGTTAATAATAATGGTGTCAGGTCAAATCACTGCTGGGCTCATAACATCAGATAATTCAGTTTTTGTGAAGACACTTTCAAAGGGAGATGTTATGGTTATCCCTCAAGGTTTGTTGCATTTTAACATAAATTCTGGTGGGAATAAAGCCTCTGCTATTCTCACCTTCAGTAGTCCAAATCCTGGTGCACAACTCCTTGATCTTGCATTGTTTGGGAACAACTTGGCTTCTTCCTTTGTGGGAAAGACTACCTTGCTTGATCTTGCCCAAGTGAAGAAGCTTAAGGCTGTTTTTGGGGGCAGTGGTTAG 621 0.4138 MVLILFLFAFFLSSTSHANAFCIADLTGAKSPEGYPCKPPSSLTVNDFVFSNFKAGNTSNFLKTSLTPAFVEQFPGVNGLGISAAKMDIDIGGVVPMHSHPGANELIIMVSGQITAGLITSDNSVFVKTLSKGDVMVIPQGLLHFNINSGGNKASAILTFSSPNPGAQLLDLALFGNNLASSFVGKTTLLDLAQVKKLKAVFGGSG* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01835 206 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 199 - -
Rops4g01835 206 CDD cupin_OxOx 21 202 IPR001929 GO:0030145
Rops4g01835 206 ProSitePatterns Germin family signature. 93 106 IPR019780 GO:0030145
Rops4g01835 206 Pfam Cupin 53 195 IPR006045 -
Rops4g01835 206 Gene3D Jelly Rolls 14 206 IPR014710 -
Rops4g01835 206 PRINTS Germin signature 161 176 IPR001929 GO:0030145
Rops4g01835 206 PRINTS Germin signature 128 148 IPR001929 GO:0030145
Rops4g01835 206 PRINTS Germin signature 98 118 IPR001929 GO:0030145
Rops4g01835 206 SMART Cupin_1_3 51 196 IPR006045 -
Rops4g01835 206 FunFam Auxin-binding protein ABP19a 15 205 - -
Rops4g01835 206 SUPERFAMILY RmlC-like cupins 27 192 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01835 Rops-Chr4 42950032 42950652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01835 21 206 Miscellaneous Gene Families AT1G72610 54.011 2.70e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01835 - - gmx:100813853 259.225