Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01834 ATGAAAATGATTTACATCCTTTCCCTTTTGGCTCTTCTCTCATCCATTTCCCATGCTGCTGTCAATGATTTCTGTGTAGCTGACCTAAAGGCTCCAGATACCCCTTCAGGCTACCACTGCAAGCCACTTATTAATGTAACAGCAGATGACTTTGTGTTTCATGGCTTTGTAGTTGGAGACACCAGAACCTCTTTCAATGCTGCATTAACATCTGCATTTGTTACTGATTTTCCAGGTGTTAATGGACTTGGCTTCTCTGCAGCAAGGTTAGACATAGCCAAAGGTGGATCAATTCCAATGCACACACATCCTGGTGCCACTGAATTACTCATAATAGTTGAAGGTCAAATCACTGCTGGGTTTATGACACCAACTGCACTCTATAACAAGACACTGAAACCAGGAGATCTTATGGTTTTTCCACAAGGGCAGTTGCATTTTCAAGTTAATTCTGGTACTGGAAAAGCTACTGCTTTTCTTGTTTTCAGTAGTGCAAACCCTGGAGCACAACTACTTGATCTTCTGTTTTTTGGTAACAGCTTATCTTCTGACATGGTGGCACAAACTACCTTCCTTGATGTTGCCCAAGTGAAGAAGCTAAAGGCTCGTTTTGGTGGCAGAGGCTAG 627 0.4242 MKMIYILSLLALLSSISHAAVNDFCVADLKAPDTPSGYHCKPLINVTADDFVFHGFVVGDTRTSFNAALTSAFVTDFPGVNGLGFSAARLDIAKGGSIPMHTHPGATELLIIVEGQITAGFMTPTALYNKTLKPGDLMVFPQGQLHFQVNSGTGKATAFLVFSSANPGAQLLDLLFFGNSLSSDMVAQTTFLDVAQVKKLKARFGGRG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01834 208 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Rops4g01834 208 SMART Cupin_1_3 54 198 IPR006045 -
Rops4g01834 208 FunFam Auxin-binding protein ABP19a 18 207 - -
Rops4g01834 208 Pfam Cupin 66 197 IPR006045 -
Rops4g01834 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Rops4g01834 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Rops4g01834 208 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Rops4g01834 208 CDD cupin_OxOx 18 204 IPR001929 GO:0030145
Rops4g01834 208 SUPERFAMILY RmlC-like cupins 23 205 IPR011051 -
Rops4g01834 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 201 - -
Rops4g01834 208 Gene3D Jelly Rolls 18 207 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01834 Rops-Chr4 42911289 42911915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01834 18 208 Miscellaneous Gene Families AT1G72610 56.477 2.61e-72 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01834 - - gmx:100783206 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01834 4 42911289 42911915 Rops4g01834 4 42911289 42911915 ECH