Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01829 ATGAAGATGATTTACGTTCTTTTCCTTTTGGCTCTTCTCTCATCCACTTCCCATGCTTCTTCTGTCAATGATTTCTGTGTAGCAGACCTAAAGGACCCAGAAACCCCTGCAGGCTATCCCTGCAAGTCACCTAAGACTGTAACAGTGGATGACTTTGTGTTCTCTAAATTTGTACCTGGAATCCTCATAGAACCTTTCAATGTTAGAGCCACCCCTGCATTTGTTAGTCAATTTCCTGGTGTCAATGGCCTTGGCATCTCTGCAACACGTTTAGACATGGAAATAGGTGGAGTGGTCCCAATGCACACACACCCTGGTGGCACTGAACTGCTAATGATGGTGGAAGGTGAAATGACTGTTGGTTTTATCTCATCTGATAATACACCTTATGTGAAGACGCTGAAACCAGGAGATATTATGGTTATCCCAAAAGGACTAGTGCATTTTAATGTAAATTCTGGTAAGGGAAAAGCCACTGCTTTTTCCGCTTACAGTAGCGCAAACCCTCGCTTGGATCTAATTCCTACTACATTGTTTGGTAACAACTTACCTTCAGGCATAGTGGCAAAAACTACCTTCATTAATGTTCTAGAAATCAAGAGGCTTAAGGCTCTTTTTGGTGGCAGTGGCTAG 633 0.4281 MKMIYVLFLLALLSSTSHASSVNDFCVADLKDPETPAGYPCKSPKTVTVDDFVFSKFVPGILIEPFNVRATPAFVSQFPGVNGLGISATRLDMEIGGVVPMHTHPGGTELLMMVEGEMTVGFISSDNTPYVKTLKPGDIMVIPKGLVHFNVNSGKGKATAFSAYSSANPRLDLIPTTLFGNNLPSGIVAKTTFINVLEIKRLKALFGGSG* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01829 210 PRINTS Germin signature 102 122 IPR001929 GO:0030145
Rops4g01829 210 PRINTS Germin signature 132 152 IPR001929 GO:0030145
Rops4g01829 210 PRINTS Germin signature 165 180 IPR001929 GO:0030145
Rops4g01829 210 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 14 200 - -
Rops4g01829 210 Pfam Cupin 62 195 IPR006045 -
Rops4g01829 210 SMART Cupin_1_3 59 200 IPR006045 -
Rops4g01829 210 ProSitePatterns Germin family signature. 97 110 IPR019780 GO:0030145
Rops4g01829 210 SUPERFAMILY RmlC-like cupins 21 203 IPR011051 -
Rops4g01829 210 FunFam Auxin-binding protein ABP19a 19 209 - -
Rops4g01829 210 Gene3D Jelly Rolls 17 210 IPR014710 -
Rops4g01829 210 CDD cupin_OxOx 18 206 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01829 Rops-Chr4 42825853 42826485 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01829 20 210 Miscellaneous Gene Families AT1G72610 52.083 1.35e-70 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01829 - - gmx:100813853 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01829 4 42825853 42826485 Rops4g01829 4 42825853 42826485 ECH