Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01822 ATGGCGGTTTCTACTATAGCTTTGTATGCGAGTCCACCGAGCAGTGTGTGTTCTACGCCTTACCCTTGTCAGATAAATGCTCATGCTTCCTACGATTTCGAATTGGGGTCTCGATCTTCATCGCCGGCGTCGACAACTCCGCCGTCGACGTCGCAGAAGCCGGTCATGGGTGGCCTTTCGTGCCTTTTCTCATCTCCGGTGGCGGCGGTAAAGCACGCACCTTTATCGTCGAGCTTTTCCGGCGCCGGAGAAGAAGATGAATTGAAGGAATTGAGTAGTTCCTTTTCCTATTCTCCGAGCAAGTTTGGTGGGTCTTCATGGAAGAGGGATCAAAGTCCCGTGTCTGTTTTTCATGGCCCTGTTTCGTGTAGTAGTAGAAGCAGCACCACTCCTGTGAGGATCATGTGTGAAAGGGGTGGTGGAACCAATGGTCTCTTTGATGGTTTTGTGAGGAGTGCTTTAGGTTCTTCTTCTTGTTTGGATTATGATTCAACAAGTGTAAATGTTGATGGGGCTGCTTCTTCTGCCCTTGATGAGTTGACCTTCAATTTGGAGGATACTTTTGTGGAGGGTGGATTTGAGCCTTATGCTAAAAAGTTGCTGCTTGGTGCTCAGTTGAGACACAAGATCTTCTGTGAAGAGTTTGTGATCAAGGCTTTTTGTGAAGCTGAGAAAGCTCATAGAGGGCAGATGCGAGCTAGTGGGGATCCGTATTTGCAGCATTGTTTAGAAACTGCTGTGTTACTGGCTTTGATTGGTGCCAATTCCACCGTAGTTGCTGCTGGGCTTTTGCATGACACTCTTGATGATGCTTTTCTGACTTATGATTATATATTTGGGACGTTTGGTGCTGGAGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTGAGTCACTTAAGCAAGCTGGCTCGAGATAATAATACAGCTAGCAAGTCAGTTGAAGCAGATCGCATGCATACAATGTTCCTTGCTATGGCAGATGCAAGAGCTGTCCTCATTAAATTGGCAGATCGATTACATAATATGATGACGCTAGATGCATTGCCAGTGGCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTAGGAATATCTAGTTGGAAGGAACAATTAGAAAATTTGTGTTTTAAGCATCTCAACCCAGTCCAGCATGAGGAGCTTTCGTCAAAGCTTGTGGAGTCCTATGATGATGCAATGTTTACTTCTGCGATAGAGAGATTGGAGCAAGCTCTTAAAGATGAAAGCATATCTTATCATGTCATTTCTGGGCGGCATAAGAGCTTGTATAGCATTTATTCCAAAATGTTAAAGAAGAAACTAACCATAGATGATATCCATGACATTTATGGGCTGCGCTTGATTGTTGACAAGGAGGAAGACTGTTATAAAGCCTTAACAGTTGTTCACCAGTTATGGTCCGAGGTACCTGGAAAGCTGAAAGATTACATATGTTGCCCCAAGTTCAATGGATATCAATCTCTGCACACTGTGGTGATGGGTGAAGGCAAGGTTCCCCTTGAAGTACAAATTCGGACAAAAGATATGCATCTGCAAGCAGAATTCGGGTTTGCTGCTCATTGGAGATACAAGGAAGATCACTGCCAGCATCCTTCATTTGTCCTTCAGATGGTTGAGTGGGCTCGGTGGGTTGTCACCTGGCAGTGTGAGGCAATGAGTAAAGATGGTTCATCTGTTGGATATGCTGATTCAATCAAGCCACCATGCAAGTTCCCTTCCCATGCTGATGATTGCCCACATTCTTACAAGCCTGATTGTGGTCAGGATGGGCCTGTGTTCGTTATCATCATTGAGAATGATAAGATGTCAGTCCATGAATTTTGTGCGAAATCAACAGTAATGGATTTGTTGGAGAGAGCTGGGAGGAGCTCTAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAATTGAGGCCAAGGCTGAATCATGAACCTGTAAGTGATCCAACTTGCAAGTTGAAGATGGGAGATGTGGTTGAGCTTACACCAGCCATACCCGACAAGTCTCTTACAGAATATAGGGAAGAAATCCAACGTATGTATGATAGAGGGCTAACTGTATCAAGCAAGGGAACTGCTGCTAGCGGCATGGTTGGCTCAAGAAGTTAA 2154 0.448 MAVSTIALYASPPSSVCSTPYPCQINAHASYDFELGSRSSSPASTTPPSTSQKPVMGGLSCLFSSPVAAVKHAPLSSSFSGAGEEDELKELSSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSSRSSTTPVRIMCERGGGTNGLFDGFVRSALGSSSCLDYDSTSVNVDGAASSALDELTFNLEDTFVEGGFEPYAKKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGTFGAGVADLVEGVSKLSHLSKLARDNNTASKSVEADRMHTMFLAMADARAVLIKLADRLHNMMTLDALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPVQHEELSSKLVESYDDAMFTSAIERLEQALKDESISYHVISGRHKSLYSIYSKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTVVHQLWSEVPGKLKDYICCPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDHCQHPSFVLQMVEWARWVVTWQCEAMSKDGSSVGYADSIKPPCKFPSHADDCPHSYKPDCGQDGPVFVIIIENDKMSVHEFCAKSTVMDLLERAGRSSRLTTYRFPLKEELRPRLNHEPVSDPTCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLTVSSKGTAASGMVGSRS* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01822 717 Pfam Region found in RelA / SpoT proteins 432 541 IPR007685 GO:0015969
Rops4g01822 717 SUPERFAMILY HD-domain/PDEase-like 199 389 - -
Rops4g01822 717 CDD NT_Rel-Spo_like 412 530 IPR007685 GO:0015969
Rops4g01822 717 FunFam GTP pyrophosphokinase RelA 390 522 - -
Rops4g01822 717 Pfam HD domain 223 373 - -
Rops4g01822 717 CDD HDc 236 364 IPR003607 -
Rops4g01822 717 Gene3D Beta Polymerase, domain 2 393 522 IPR043519 -
Rops4g01822 717 SMART RelA_SpoT_2 432 542 IPR007685 GO:0015969
Rops4g01822 717 SUPERFAMILY Nucleotidyltransferase 379 568 IPR043519 -
Rops4g01822 717 ProSiteProfiles HD domain profile. 238 342 IPR006674 -
Rops4g01822 717 SMART hd_13 234 351 IPR003607 -
Rops4g01822 717 Gene3D Hypothetical protein af1432 205 389 - -
Rops4g01822 717 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 113 683 - -
Rops4g01822 717 ProSiteProfiles S4 RNA-binding domain profile. 655 691 - -
Rops4g01822 717 FunFam GTP pyrophosphokinase RelA 200 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01822 Rops-Chr4 42725079 42729281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01822 233 539 EF-hand Containing Proteins AT3G17470 30.303 5.03e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01822 K00951 - gmx:100787301 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01822 4 42725079 42729281 Rops4g01822 4 42725079 42729281 ECH