Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01816 ATGGCCCTTGCAAAAGAAATTATGTGTTCTTCTTCACTAGTAGAAAGGTCCTCGTTTATTCCATCTTCCTCAAGGGTGCTTCTAAGTCACAGTTTTCAACAGAAGAAGAATGGCTTCTTTTTCAACCCTGTGTTGGTTCCTTTGGAAAACAGAAGAGTTGTGAGGTTGAGGAAGGCTGCAAAGTTTCCTGTTGCAGCTATCAGTGAGGATTTGGTGAAGGGCTCTTCATCCAACTCTTCTTCTTCTTCTGTTTCTTCTTCTGAAGAGAAGCCAGTGAAATTCAAGGTTAGAGCTGTGGTGACAGTGAGGAACAAGATCAAAGAGGATTTCAAAGAGACAATTGTGAAGCATATTGATGCTTTATCTGACAGAATTGGAAGGAATGTTGTCTTGGAGCTTATTAGCACTGAGATTGATCCAAAAACCAAAGCTGCAAAGAAAAGTAAGGAAGCAGTGCTGAAGGATTGGTCAAAGAAATCTAATGTTAAAGCTGAGAGAGTTAATTACACAGCTGAATTCATTGTGGACTCTAGTTTTGGGGAGCCAGGTGCTATTACTGTGGTAAACAATCACCAGAAAGAGTTTTTCTTGGAAAGTATTACCATTGAAGGATTTGTAAGTGGAGCTGTTCATTTACCCTGCAACTCTTGGGTTCAAGCCAGAAAAGATCATCCTGGAAAGAGGATTTTCTTTTCTAATAAGCCTTCTTTACCAAGTGATACACCAGCTGGGCTAAGATTATTAAGGGAGAAAGAGCTGAGAAATCTAAGAGGTGATGGCAAAGGAGTTAGAAAATTATCTGACAGAATATATGACTATGACACATTCAATGATTTGGGAAATCCAGATAAAGGAATTGACCTTGCAAGACCACCTCTTGGAGGATCTGACATGTATCCATACCCAAGACGGTGTCGTACTGGCCGTGAACCATCTGATACAGATATGTATGCAGAGAGTCGTGTGGAGAAGCCACATCCTATGTATGTACCAAGAGATGAAAGATTTGAAGAGTCTAAGCAGAACACATTTTCTGTAAAGAGGCTCAAGGCAGTGCTTCATAACTTGATTCCAAGCCTTAAGTCTAGCCTTTCTGCTAACAACAAAGACTTCAATGAATTCTCAGATGTTGATGGTCTTTACAGTGAGGGACTGCTAATTAAGTTTGGGTTGCAAGATGATGTTTTGAAGAAACTCCCATTGCCAAAATTTGTCAGCAAGATCCAAGAATCTAGTCAGGGACTTCTTAAGTATGACATTCCCAAGATTATATCCAAGGACAAATTTGCCTGGTTGAGAGATGACGAATTTGCCCGCCAAGCAATAGCAGGAGTTAACCCTGTTAACATTGAAAGGCTTACAACTTTCCCACCTGTTAGCAAATTAGACCCTGAAATATATGGTCCACTAGAGTCTGCTCTTAAAGAAGAACACATTTTAAATCAACTTAATGGCATGACTGTCCAACAGGCAATTGATGAAAATAAGCTGTTTATTATTGATTATCATGATGTCTACCTTCCATTTCTTGAAAGGATCAATTCCCTTGATGGTAGAAAATCATATGCTACACGTACCATATTTTTCTTGACACCCCTTGGTACTCTAAAACCTGTTGCTATAGAACTTAGCCTGCCTCCATCTGGACCAAGTTCCCGATCAAAACGTGTAGTTACACCTCCTGTAGATGCAACTACTAATTGGATGTGGATGCTTGCCAAGGCCCATGTTTGCTCCAATGATGCTGGGGTGCACCAACTTGTCAACCATTGGTTACGCACACATGCCTGCATGGAACCATTTATATTGGCAGCTCATAGGCAATTGAGTGCCATGCATCCTATTTTCAAGTTATTGGATCCACACACGAGGTACACTTTGGAGATCAATGCCTTAGCTCGCCAAAGCTTAATCAATGCAGATGGTGTCATTGAGTCTTGCTTCACTCCTGGTCGATATTGCATGGAGATTAGTTCTGCTGCTTACAAAAACAACTGGCGATTTGACATGGATAGCCTCCCCGCAGATCTCATCCGCAGGGGAATGGCAGTACCTGACCCCACACAACCACATGGTCTAAAGCTCATAATGGAAGACTACCCTTATGCAGAAGATGGACTATTGATCTGGTCTGCAATAGAAAATTGGGTTCGTACTTATGTGAACTATTACTACCCAAATTCAAGCCTGATATGCAATGACAGAGAGCTACAAGCTTGGTATTCTGAGTCAATCAACGTGGGCCATGCTGATATGAGGCACCAAAGCTGGTGGCCCACATTAAACAATAGTGACAATCTTGTCTCTATACTCAGCATCTTGATTTGGAATGCATCTGCACAACATGCTGCTCTTAACTTTGGGCAGTATCCCTATGGAGGGTATGTGCCTAATCGTCCCCCATTGATGAGAAGATTAATACCGGAAGAGAGTGACCCTGAATATGAAAGTTTCCTAGCAGACCCACAAAAGTATTTTCTGAATGCATTGCCTAGTTTGTTGCAAGCTTCAAAATATATGGCTGTGGTTGACACACTCTCCACTCACTCACCTGATGAGGAGTACTTGGGAGAGCGGCAACAACCTTCAATTTGGTCAGGTGATGCTGAGATCGTTGAAGCATTCTATGAGTTCTCTGCACAGATTAGGCAGATAGAGAAGGAGATTGAGAATAGAAACTGTGATAGGACTCTAAGGAACCGTTGTGGTGCAGGGGTGTTGCCTTATGAATTACTTGCACCTAGCTCAGGACCTGGTGTTACTTGCAGAGGGGTTCCCAACAGTGTGTCCACATAA 2796 0.4199 MALAKEIMCSSSLVERSSFIPSSSRVLLSHSFQQKKNGFFFNPVLVPLENRRVVRLRKAAKFPVAAISEDLVKGSSSNSSSSSVSSSEEKPVKFKVRAVVTVRNKIKEDFKETIVKHIDALSDRIGRNVVLELISTEIDPKTKAAKKSKEAVLKDWSKKSNVKAERVNYTAEFIVDSSFGEPGAITVVNNHQKEFFLESITIEGFVSGAVHLPCNSWVQARKDHPGKRIFFSNKPSLPSDTPAGLRLLREKELRNLRGDGKGVRKLSDRIYDYDTFNDLGNPDKGIDLARPPLGGSDMYPYPRRCRTGREPSDTDMYAESRVEKPHPMYVPRDERFEESKQNTFSVKRLKAVLHNLIPSLKSSLSANNKDFNEFSDVDGLYSEGLLIKFGLQDDVLKKLPLPKFVSKIQESSQGLLKYDIPKIISKDKFAWLRDDEFARQAIAGVNPVNIERLTTFPPVSKLDPEIYGPLESALKEEHILNQLNGMTVQQAIDENKLFIIDYHDVYLPFLERINSLDGRKSYATRTIFFLTPLGTLKPVAIELSLPPSGPSSRSKRVVTPPVDATTNWMWMLAKAHVCSNDAGVHQLVNHWLRTHACMEPFILAAHRQLSAMHPIFKLLDPHTRYTLEINALARQSLINADGVIESCFTPGRYCMEISSAAYKNNWRFDMDSLPADLIRRGMAVPDPTQPHGLKLIMEDYPYAEDGLLIWSAIENWVRTYVNYYYPNSSLICNDRELQAWYSESINVGHADMRHQSWWPTLNNSDNLVSILSILIWNASAQHAALNFGQYPYGGYVPNRPPLMRRLIPEESDPEYESFLADPQKYFLNALPSLLQASKYMAVVDTLSTHSPDEEYLGERQQPSIWSGDAEIVEAFYEFSAQIRQIEKEIENRNCDRTLRNRCGAGVLPYELLAPSSGPGVTCRGVPNSVST* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01816 931 SUPERFAMILY Lipoxigenase 237 930 IPR036226 -
Rops4g01816 931 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 235 931 IPR013819 GO:0016702|GO:0046872
Rops4g01816 931 PANTHER LIPOXYGENASE 95 930 IPR000907 GO:0016702|GO:0034440|GO:0046872
Rops4g01816 931 Gene3D - 564 930 - -
Rops4g01816 931 ProSiteProfiles PLAT domain profile. 110 232 IPR001024 GO:0005515
Rops4g01816 931 FunFam Lipoxygenase 237 339 - -
Rops4g01816 931 Pfam Lipoxygenase 245 914 IPR013819 GO:0016702|GO:0046872
Rops4g01816 931 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 94 235 IPR036392 GO:0005515
Rops4g01816 931 Gene3D - 429 562 - -
Rops4g01816 931 ProSitePatterns Lipoxygenases iron-binding region signature 1. 585 599 IPR020833 GO:0016702|GO:0046872
Rops4g01816 931 PRINTS Plant lipoxygenase signature 202 220 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 300 319 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 368 389 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 267 283 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 522 546 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 416 432 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 228 249 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 455 474 IPR001246 GO:0016491
Rops4g01816 931 PRINTS Plant lipoxygenase signature 843 857 IPR001246 GO:0016491
Rops4g01816 931 CDD PLAT_LH2 94 233 IPR042057 -
Rops4g01816 931 PRINTS Lipoxygenase signature 585 602 IPR013819 GO:0016702|GO:0046872
Rops4g01816 931 PRINTS Lipoxygenase signature 605 625 IPR013819 GO:0016702|GO:0046872
Rops4g01816 931 PRINTS Lipoxygenase signature 567 584 IPR013819 GO:0016702|GO:0046872
Rops4g01816 931 Gene3D - 237 339 - -
Rops4g01816 931 FunFam Lipoxygenase 340 429 - -
Rops4g01816 931 FunFam Lipoxygenase 564 930 - -
Rops4g01816 931 SMART LH2_4 94 233 IPR001024 GO:0005515
Rops4g01816 931 FunFam Lipoxygenase 430 562 - -
Rops4g01816 931 Gene3D - 340 428 IPR027433 -
Rops4g01816 931 Gene3D PLAT/LH2 domain 80 235 - -
Rops4g01816 931 MobiDBLite consensus disorder prediction 287 315 - -
Rops4g01816 931 ProSitePatterns Lipoxygenases iron-binding region signature 2. 612 622 IPR020834 GO:0016702|GO:0046872
Rops4g01816 931 Pfam PLAT/LH2 domain 146 231 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01816 Rops-Chr4 42592790 42598097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01816 1 930 Acyl Lipid Metabolism Gene Families AT1G17420 72.133 0.0 1405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01816 K00454 - gmx:100793614 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01816 4 42592790 42598097 Rops4g01816 4 42592790 42598097 ECH