Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01762 ATGGATGCAGTAGACAAGTCTTTTTCTGAGCTTGTCAGCATCGTCAAATCATGGATTCCCTGGAGATCTGAGCCAGCAAACGTGTCAAGGGATTTTTGGATGCCCGATCACAGTTGTAGAGTATGCTACGAGTGTGATTCCCAGTTCACCTTATTCAATCGCAGACACCATTGTCGTCTTTGTGGACGAATTTTTTGTGCCAAGTGTACAACAAACTCTGTTCCTGCCCCATTTAGCAGCCAAAGGAATTCTTGGGATGAGTTGGAAAAGATCCGTGTATGCAATTATTGTTACAAGAATTGGGAGCAGGGCATAGTTGCTTTTGATAACAGTAATCAGGTTTCCAATCTGGAACGTAGTAATTCATTGTCAACTTCAAGCTTGGCTAGCAGCAAAACCAGTGGCACTGCTAACAGTAGTAATATTACTCTTTGCTCTATGCCTTATTCAGTTGGGTCTTATCAACAAATGCAACAGGGTTCCTGCCTGAACCTGCATCAATCACCTATGAGGGGAAAAGACACTGATGAGGAAAGTTTATCAGCAATAGGAGGGAGGAATGATCTTGTAGCAGACCTAGGGGTTCCATTACCAAAGCAATATGGGTTCTCAAATAACAGGAGTGATGATGATGAGGATGAGTATGGTATATATCGGTCAGATTCTGATATGAGGCATTATCCTCAATTGAATAGCTATTATGGACAGGCTGATCTTGACAGGATAAGCAACATTGATGGCTCACAGAAAGTGCATCCTGATGGAGAAAACATTAATGCAAAACTCCCTTCAAACTACATTTTTGCTGCACAGGGTTTAGAAGGAACACCAGTTATTGCAAAAAATGAAGATGAACCTTATATATGTGATGAAAATGAAGCACCTCCTTCTTCATTATATGTTTCAGAGGATGTTGATGCTGAACCTGTTGATTTTGAAAATAATGGACTTCTCTGGCTCCCTCCTGAACCAGAAGATGAAGAAGATGAACGGGAAGCTATTTTATTTGATGATGATGATGATAATGATGGGAATGCCACAGGAGAGTGGGGGTATCTGCGCAATTCAAGCAGTTTCGGAAGTGGGGAGTATCGACACAGAGAAAGGTCAAGCGAGGAGCACAAGAAGGTAATGAAGAATGTAGTTGATGGGCACTTCAGGGCATTGGTAGCTCAGCTGTTACAGGTTGAGAACCTACCTGTTGAAGACAATGACATAAACAGTTGGTTGGAAATAATCATTTCTCTGTCATGGGAAGCTGCTACATTATTGAAACCAGATATGAGCAAAGGTGGAGGGATGGACCCAGCTGGTTATGTGAAAGTCAAATGCATTGCATGCGGGAGCCGCATTGAAAGTGTGGTGGTTAAAGGAGTTGTTTGTAAGAAAAATGTGGCTCATCGGCGAATGGCATCAAAAAAGGATAAACCTCGCCTGTTGATACTTGGAGGGGCTCTTGAGTACCAGCGTGTTACCAACCTCTTATCTAGTGTAGATACCCTATTGCAGCAGGAAATGGACCATCTGAAGATGGCAGTGGCAAAGATAGCTGCACACCAGCCAAATATCCTTTTGGTGGAGAAATCAGTTTCTCGATATGCACAGGAATATCTTCTTGCAAAAGACATATCTCTGGTTCTCAATGTTAAGAGACCACTTTTGGAGCGCATAGCACGTTGCACAGGCACTCAGATAGTGGCTTCAATTGATCATCTTTCATCACAAAAGTTAGGTCACTGTGAAACATTTCATGTTGGAAAGTTTCTTGAAGACCTAAATAGTGCTGGTCATGGTGGTGGGAAAAAAACGGTGAAAACATTGATGTTTTTTGAAGGCTGCCCAAAACCATTAGGTTGCACAATTTTACTTAAAGGAGCTGACAAGGATGAATTGAAGAAGGTAAAGCATGTGGTTCAGTATGGAGTTTTTGCAGCTTACCATTTGGCTCTGGAGACATCTTTTCTTGCTGACGAAGGAGTCTCCCTGCCAGAGATTCCATTAAACAGTCTAGCCCTTCCAAATAAACCATCGTCCATTCAGAGGTCCATCTCAACAGTTCCTGGTTTCAGTGTTCCTGGCAATGAAAAGTCTCAGGGGCATGAACCTGACACTGAACCACGGAGAACAAAAAGTGTTACAGTTGCCCAAATAGCCTCATTAGCCTGCAATACAGGACCCTGTGTGTCTAATGGTGGTTCTTCATCTATGCCACCTGGATCAAGTCTCAACCATTCAACTGCCCTGTACTCCTCAACTGTTGCTTCTAAAAATGCAATTCCAGGGTCATACCATACGGAGCTTCTTTCATGCACTGGTAAAGAGAGAAATGAAATGAACTCCAAACAACCTATAGTGGACGAAACTTCTGTTGTGGACAACACTCGGGCAGTTATGGATGATCCTTCTGTAAATGGCTCTGAAACTACAGAGAAATTATATCAAGGCATCTTCACTGACAATCCTGAAAATGGTCATAGCAAAATCTCTGCAAACCAATTAAGTGGTTCAGAGTCGTTTTCTCCAGAACATGTTCAAAACCATCCTGAGAAGCTTGGAACCACAAATGAAGAGCCAGTTCCTCAAAAAGAAGAATTTCCTCCATCACCATCTGACCATCAAAGCATTTTGGTGTCTTTGTCCTCCCGGTGTGTATGGAAGGGAACTGTGTGTGAGAGGTCCCATTTATTTCGAATTAAATACTATGGAAGCTTTGACAAACCATTGGGTCGGTTTCTGCGGGACCATTTATTCGATCAGAGCTATCGATGCCATTCTTGTGAAATGCCATCGGAAGCACATGTGCATTGTTATACTCATCGACAGGGAACACTCACCATATCAGTCAAGAAACTACCAGAAATCATCCTACCTGGTGAAAGGGACGGAAAGATTTGGATGTGGCACAGGTGCTTGCGGTGTCCGAGAACCAATGGCTTTCCTCCTGCTACACAGAGAATAGTAATGTCTGATGCTGCTTGGGGTTTATCATTTGGGAAATTTTTGGAGCTCAGTTTCTCAAACCATGCTGCAGCCAGCAGGGTGGCAAGCTGTGGCCATTCTTTACACAGAGATTGTCTTCGTTTTTATGGATTTGGGAAAATGGTTGCTTGTTTTCGATATGCATCGATTGATGTTCACTCAGTCTACCTTCCCCCACACAAACTGGAATTTGATTATGGGAATCAGGATTGGATACAAAAAGAATTAGACGAGGTGGTCAACAGGGCAGAGCTTTTATTCTCTGAAGTGCTCAATGGTCTTAGTCAAATTGGAGAGAAAAGATCTAGTGCAGTTCCAATCAGTAGTGGCCTGAAAACACCAGAATTAAGACGGCAAGTTGCTGAACTAGAGGGGATGTTGCAAAAGGAGAAACTAGAATTTGAGGAAACTCTTCAAAAGATTTTGAACCAAGAAAAGAAAAATGGCCAACCTGGGATTGACATTCTTGAAATTAATCGATTGTGGAGGCAGTTACTTTTCCAATCATATATGTGGGACCACCGCCTTATTTACGCAGCCAACTTAGCCAATTCCAACAATGAAACTAGTCTAAACAGTTCAATTTCAGAGGATAAGGAACCTATTGATGAAAATCGTGTGGTCTCCATGGCAGGAAGGGGATTCAGTAGTGTTGGCTCTATTCATGGTGATCCAAAGCTTAACAAAAGCCCCAGCCCTGGAGAAGGAGGTGGAGCAGTTGATGGCAAAAGTTCCCAGTCTGATGCATTTCATCAAGAAATTGACATGGCAAAAGATAAACATCATGAGAAAGAAGACCAACCTAATCTTCCAATCAGCAAAAGCACAAGTGATCAGTCTGAACTTCTTGAACCTGATTTGGGTGTTCGCAGAGCTCTCTCTGATGGGCCATTTCCTGTCATACCTTGTTTGTCTGATACACTTGATGCAAAATGGACAGGTGAAAACCGCTCAGGATTTGGAATTCAAAAGGATAACACTTCCGTAAATCCTGATACGTTTATGTCAGATGCTTTGACGACCACTACACAAAAGGAAACATACAATCTAGGGGATCGTGCAGATGATCAGAATGGCTCCAAGGGTATCTATTCTGCTTCTAAAGGTCATGATAATATGGAAGACTCTTCAAGTTGGTTAGGAATGCCCTTCTTAAACTTCTACCGCCAATTTAACAAGAATTTTTTTGCTAGTACACAAAAGTTTGATACACTAGTTGACTATAATCCTGTTTATGTATCATCCTTCCGGAAGCTGGAACTCCAAGGTGGAGCAAGGCTGCTTCTGCCAATTGGTGTTAATGACACTGTAATTCCAATATATGATGATGAACCCTCAAGTATCATAGCTTTTGCCTTAATGTCACCAGAATATATTTTCCAAATGACTGATGAAGGAGAGAGACCAAAAGAAGGAACTGAGTTGGGTTCATCATATTTTTCTGACTCGGGCACCTTCCAGTCATTTTCATCTGTTGATGAAACAGCTTTTGATTCTCAGAAAAGTTTTGGGTCAATAGAGGATATGCTATTGTCCGTGTCTGGATCTCATAACTCATCAATGCTGGACCCGGAGTTATATACAAAGGCTATGCATGCCAGAATTTCCTTTGGAGAAGATGGTCCCCTTGGCAAGGTAAAATACTCGGTGACTTGTTACTATGCCAAGCGATTTGAAGCCTTAAGGAGGGTCTGTTGTCCTTCAGAGCTCGACTATATAAGGTCTCTTAGTCGTTGTAAGAAATGGAGAGCTCAAGGTGGGAAAAGTAACGTGTTCTTTGCAAAAACCTTGGATGATCGATTTATCATCAAACAAGTTACCAAAACAGAGCTTGAATCATTCATTAAATTTGGTCCTGAATACTTCAAGTACCTTTCTGAATCCATAGGCACAGGAAGTCCAACATGCCTGGCAAAGATTCTTGGCATATACCAGGTTACGTCAAAGCATCTTAAAGGAGGGAAAGAATCAAGGATGGATGTTTTGGTTATGGAGAATCTTCTATTCAGGAGAACTGTGACACGACTATATGATCTTAAAGGATCTTCCAGGTCTCGGTATAATCCAGATAGTACCGGGAAAAACAAAGTTCTGCTGGACCAGAACTTGATTGAAGCAATGCCAACTTCTCCTATTTTTGTGGGAAACAAAGCAAAACGATTGTTAGAGAGAGCTGTCTGGAATGACACTGGTTTCCTCGCATCAGTTGATGTTATGGACTATTCTTTACTTGTTGGGGTGGATGAAGAGAAGCATGAGTTAGTCCTTGGAATCATTGATTTCATGAGGCAGTACACATGGGACAAGCATCTTGAAACATGGGTGAAAGCTTCAGGGATCCTTGGAGGGCCAAAGAACACACCTCCAACAGTTATATCACCAAAGCAATACAAGAAAAGGTTCAGGAAAGCAATGACCACTTACTTTCTCATGCTTCCAGATCAATGGTCTCCTCCATCTATTATTCCTAGTCATTCCCAATCTGATTTAGGTGAAGACAACAACACACAATCTAGAACTCCAGCTGAATGA 5511 0.4201 MDAVDKSFSELVSIVKSWIPWRSEPANVSRDFWMPDHSCRVCYECDSQFTLFNRRHHCRLCGRIFCAKCTTNSVPAPFSSQRNSWDELEKIRVCNYCYKNWEQGIVAFDNSNQVSNLERSNSLSTSSLASSKTSGTANSSNITLCSMPYSVGSYQQMQQGSCLNLHQSPMRGKDTDEESLSAIGGRNDLVADLGVPLPKQYGFSNNRSDDDEDEYGIYRSDSDMRHYPQLNSYYGQADLDRISNIDGSQKVHPDGENINAKLPSNYIFAAQGLEGTPVIAKNEDEPYICDENEAPPSSLYVSEDVDAEPVDFENNGLLWLPPEPEDEEDEREAILFDDDDDNDGNATGEWGYLRNSSSFGSGEYRHRERSSEEHKKVMKNVVDGHFRALVAQLLQVENLPVEDNDINSWLEIIISLSWEAATLLKPDMSKGGGMDPAGYVKVKCIACGSRIESVVVKGVVCKKNVAHRRMASKKDKPRLLILGGALEYQRVTNLLSSVDTLLQQEMDHLKMAVAKIAAHQPNILLVEKSVSRYAQEYLLAKDISLVLNVKRPLLERIARCTGTQIVASIDHLSSQKLGHCETFHVGKFLEDLNSAGHGGGKKTVKTLMFFEGCPKPLGCTILLKGADKDELKKVKHVVQYGVFAAYHLALETSFLADEGVSLPEIPLNSLALPNKPSSIQRSISTVPGFSVPGNEKSQGHEPDTEPRRTKSVTVAQIASLACNTGPCVSNGGSSSMPPGSSLNHSTALYSSTVASKNAIPGSYHTELLSCTGKERNEMNSKQPIVDETSVVDNTRAVMDDPSVNGSETTEKLYQGIFTDNPENGHSKISANQLSGSESFSPEHVQNHPEKLGTTNEEPVPQKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIKYYGSFDKPLGRFLRDHLFDQSYRCHSCEMPSEAHVHCYTHRQGTLTISVKKLPEIILPGERDGKIWMWHRCLRCPRTNGFPPATQRIVMSDAAWGLSFGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASIDVHSVYLPPHKLEFDYGNQDWIQKELDEVVNRAELLFSEVLNGLSQIGEKRSSAVPISSGLKTPELRRQVAELEGMLQKEKLEFEETLQKILNQEKKNGQPGIDILEINRLWRQLLFQSYMWDHRLIYAANLANSNNETSLNSSISEDKEPIDENRVVSMAGRGFSSVGSIHGDPKLNKSPSPGEGGGAVDGKSSQSDAFHQEIDMAKDKHHEKEDQPNLPISKSTSDQSELLEPDLGVRRALSDGPFPVIPCLSDTLDAKWTGENRSGFGIQKDNTSVNPDTFMSDALTTTTQKETYNLGDRADDQNGSKGIYSASKGHDNMEDSSSWLGMPFLNFYRQFNKNFFASTQKFDTLVDYNPVYVSSFRKLELQGGARLLLPIGVNDTVIPIYDDEPSSIIAFALMSPEYIFQMTDEGERPKEGTELGSSYFSDSGTFQSFSSVDETAFDSQKSFGSIEDMLLSVSGSHNSSMLDPELYTKAMHARISFGEDGPLGKVKYSVTCYYAKRFEALRRVCCPSELDYIRSLSRCKKWRAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPEYFKYLSESIGTGSPTCLAKILGIYQVTSKHLKGGKESRMDVLVMENLLFRRTVTRLYDLKGSSRSRYNPDSTGKNKVLLDQNLIEAMPTSPIFVGNKAKRLLERAVWNDTGFLASVDVMDYSLLVGVDEEKHELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNTPPTVISPKQYKKRFRKAMTTYFLMLPDQWSPPSIIPSHSQSDLGEDNNTQSRTPAE* 1837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01762 1836 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 451 625 - -
Rops4g01762 1836 SMART fyve_4 28 103 IPR000306 GO:0046872
Rops4g01762 1836 MobiDBLite consensus disorder prediction 1245 1262 - -
Rops4g01762 1836 MobiDBLite consensus disorder prediction 683 710 - -
Rops4g01762 1836 MobiDBLite consensus disorder prediction 817 872 - -
Rops4g01762 1836 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 107 IPR013083 -
Rops4g01762 1836 CDD Fab1_TCP 387 659 - -
Rops4g01762 1836 MobiDBLite consensus disorder prediction 817 852 - -
Rops4g01762 1836 SMART PIPK_2 1512 1803 IPR002498 GO:0016307|GO:0046488
Rops4g01762 1836 Pfam TCP-1/cpn60 chaperonin family 405 647 IPR002423 GO:0005524
Rops4g01762 1836 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1478 1802 IPR002498 GO:0016307|GO:0046488
Rops4g01762 1836 Pfam FYVE zinc finger 33 101 IPR000306 GO:0046872
Rops4g01762 1836 MobiDBLite consensus disorder prediction 1343 1363 - -
Rops4g01762 1836 SUPERFAMILY GroEL apical domain-like 452 625 IPR027409 -
Rops4g01762 1836 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1661 1803 - -
Rops4g01762 1836 Gene3D GroEL 452 625 IPR027409 -
Rops4g01762 1836 Coils Coil 1113 1140 - -
Rops4g01762 1836 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 1504 1659 - -
Rops4g01762 1836 Gene3D - 1661 1803 - -
Rops4g01762 1836 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 102 IPR017455 -
Rops4g01762 1836 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1498 1659 IPR027484 -
Rops4g01762 1836 SUPERFAMILY SAICAR synthase-like 1535 1802 - -
Rops4g01762 1836 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 22 1815 - -
Rops4g01762 1836 MobiDBLite consensus disorder prediction 1814 1836 - -
Rops4g01762 1836 CDD FYVE_PIKfyve_Fab1 32 99 - -
Rops4g01762 1836 CDD PIPKc_PIKfyve 1539 1802 IPR044769 GO:0000285
Rops4g01762 1836 MobiDBLite consensus disorder prediction 1207 1274 - -
Rops4g01762 1836 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 24 108 - -
Rops4g01762 1836 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1577 1744 IPR002498 GO:0016307|GO:0046488
Rops4g01762 1836 SUPERFAMILY FYVE/PHD zinc finger 31 102 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01762 Rops-Chr4 41779922 41790692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01762 2 1836 EF-hand Containing Proteins AT3G14270 60.495 0.0 2083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01762 K00921 - gmx:100819364 3121.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01762 4 41779922 41790692 Rops4g01762 4 41779922 41790692 ECH