Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01757 ATGGCTTCTGATTCCCCCTTTCCTGTAGCCAACAAAAACATCAACCCCAAGGTTCTGAAATGTGAGTATGCTGTTCGAGGAGAGATTGTGACACTTGCCCAGAATTTGCAAAAGGATTTACAGGCCAATCCAGGTTCTCATTCATTTGATGAGATACTTTACTGCAACATTGGAAATCCTCAGTCTCTTGGCCAGCCACCAATAACTTTTTTCCGAGAGGTTCTTGCATTATGTGACCATCCAGCTCTTTTGGACAAAAGTGAAACACAGGGTTTATTCAGTACTGATGCAATCCAGCGAGCATGGCAGATTGTGGATCAGATTCCTGGGAGAGCAACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGCTTGCGTGATACAATAGCTGCTGGAATCAAAGAGCGTGATGGTTTTCCTGCTGATCCCAATGACATTTTCTTGACAGATGGTGCAAGCCCAGCGGTCCATATGATGATGCAATTACTTATAAGATCGGAACATGATGGTATTCTATGTCCCATCCCTCAGTACCCTCTGTACTCAGCCTCAATTGCCCTCCATGGTGGCAGCCTGGTACCTTATTATCTAGATGAAGCAACTGGTTGGGGGTTGGAAATATCCGAACTCAAGAAGCAATTGGAGGCTGCCAAGTCCAAGGGCATCAGTGTTAGGGCTTTAGTTGTCATAAATCCTGGCAATCCAACAGGACAGGTTCTTTCGGAGGAAAATCAACGGGATATAGTAGAATTTTGCAAGCGAGAAGGTTTAGTTCTTTTGGCTGATGAGGTATATCAAGAAAATGTTTATGCTCCTGAGAAGAAATTTCACTCTTTCAAGAAGGTATCTCGGTCCATGGGATATAGTGAGAAGGATATCACCTTGGTATCTTTTCAGTCAGTCTCCAAAGGCTATCATGGGGAGTGTGGGAAACGAGGAGGTTATATGGAAGTGACTGGGTTTTCTACAGAAGTGAGGGAACAGATATATAAAGTTGCATCTGTGAATCTTTGTGCTAACATCACTGGTCAAATTCTTGCAAGTTTGATCATGAGTCCGCCGAAGGTTGGAGATGAGTCCTATGAGTCATTCATGGCTGAGAAGGAGAGTATTTTATCCTCCCTTGCTAGGCGTGCAAAGACACTAGAAGAAGCTTTTAACAAATTAGAGGGTGTAACATGCAACAAAGCAGAAGGTGCAATGTATCTGTTTCCCCAAATTCGCCTGCCTCAAAAGGCTATCAAAGCTGCAGAGGCTGCAAAGAAAGCACCTGATGCCTTCTATTGTAACCGCTTGCTTAATGCCACAGGAGTAGTTGTTGTTCCTGGTTCTGGTTTTGGACAGGTTCCTGGCACTTGGCATTTTAGGTGCACCATATTGCCTCAAGAAGATAAGATTCCAGCTATTGTCACCCGCTTGACACAGTTCCATGAAAAATTCATGGATGAGTTTCGTGATTGA 1461 0.4401 MASDSPFPVANKNINPKVLKCEYAVRGEIVTLAQNLQKDLQANPGSHSFDEILYCNIGNPQSLGQPPITFFREVLALCDHPALLDKSETQGLFSTDAIQRAWQIVDQIPGRATGAYSHSQGIQGLRDTIAAGIKERDGFPADPNDIFLTDGASPAVHMMMQLLIRSEHDGILCPIPQYPLYSASIALHGGSLVPYYLDEATGWGLEISELKKQLEAAKSKGISVRALVVINPGNPTGQVLSEENQRDIVEFCKREGLVLLADEVYQENVYAPEKKFHSFKKVSRSMGYSEKDITLVSFQSVSKGYHGECGKRGGYMEVTGFSTEVREQIYKVASVNLCANITGQILASLIMSPPKVGDESYESFMAEKESILSSLARRAKTLEEAFNKLEGVTCNKAEGAMYLFPQIRLPQKAIKAAEAAKKAPDAFYCNRLLNATGVVVVPGSGFGQVPGTWHFRCTILPQEDKIPAIVTRLTQFHEKFMDEFRD* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01757 486 Pfam Aminotransferase class I and II 110 459 IPR004839 GO:0009058|GO:0030170
Rops4g01757 486 CDD AAT_like 101 473 - -
Rops4g01757 486 Gene3D - 63 113 - -
Rops4g01757 486 FunFam Alanine aminotransferase 2 63 113 - -
Rops4g01757 486 Coils Coil 365 392 - -
Rops4g01757 486 Gene3D Aspartate Aminotransferase, domain 1 13 484 IPR015422 GO:0003824
Rops4g01757 486 PANTHER ALANINE AMINOTRANSFERASE 8 485 IPR045088 GO:0008483
Rops4g01757 486 Gene3D - 114 360 IPR015421 GO:0003824
Rops4g01757 486 FunFam alanine aminotransferase 1 347 486 - -
Rops4g01757 486 FunFam alanine aminotransferase 2 114 360 - -
Rops4g01757 486 SUPERFAMILY PLP-dependent transferases 12 480 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01757 Rops-Chr4 41676361 41682459 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01757 K00814 - gmx:100776235 894.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01757 4 41676361 41682459 Rops4g01757 4 41676361 41682459 ECH