Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01752 ATGGCGGAGAAATCTTGCATCAAGCGCCTTCAGAAGGAGTATAGAGCCCTATGTAAAGAGCCAGTTTCCCATGTTGTGGCTCGTCCTTCACCTAGTGATATTCTTGAGTGGCATTACGTGTTGGAGGGAAGTGAAGGAACACCTTTTTCAGGTGGATATTACTATGGAAAAATCAAGTTTCCTCCTGAATATCCATATAAACCTCCTGGAATCAGCATGACTACACCTAATGGACGGTTCATGACACAGAAAAAAATTTGTTTATCAATGAGTGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCTGTATCAAGCATACTTACAGGGCTTCTTTCATTCATGATGGACAACAGTCCAACCACTGGCAGTGTAAACACCACTACTGCTGAGAAGCAGCGTCTAGCAAAATCTTCCCTTTCTTTCAATTGTAAGAATGCAACATTCAGGAAAATGTTCCCTGAGTATGTGGAGAAGTACAACCAGCAACAGCTTTCTGAGCAAGCTGCTTCTGAGCAGGTGTCATCAGAGCCAGCTCATGACAAAAGTTCAAGGCCTGTTTTGGAGAAGAATTTAGATTCTTCCACAGGAGAAGACATGAAAAGAGTAGAGGGGTTGAAGGAAGTGAGGAAAAACGGAAAGCAACCATTTCCAACATGGATGATGTTATTACTTTTCTCCATCTTTGGGATTGTAATGGCATTGCCCCTTCTTCAGCTGTGA 723 0.4232 MAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFSGGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQLSEQAASEQVSSEPAHDKSSRPVLEKNLDSSTGEDMKRVEGLKEVRKNGKQPFPTWMMLLLFSIFGIVMALPLLQL* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01752 240 MobiDBLite consensus disorder prediction 178 208 - -
Rops4g01752 240 FunFam Ubiquitin-conjugating enzyme E2 34 1 177 - -
Rops4g01752 240 Pfam Ubiquitin-conjugating enzyme 9 132 IPR000608 -
Rops4g01752 240 SUPERFAMILY UBC-like 5 157 IPR016135 -
Rops4g01752 240 MobiDBLite consensus disorder prediction 167 208 - -
Rops4g01752 240 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 162 IPR000608 -
Rops4g01752 240 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 7 159 - -
Rops4g01752 240 CDD UBCc 7 157 IPR000608 -
Rops4g01752 240 SMART ubc_7 8 162 - -
Rops4g01752 240 Gene3D Ubiquitin Conjugating Enzyme 1 178 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01752 Rops-Chr4 41598626 41603140 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01752 1 240 Miscellaneous Gene Families AT1G17280 77.083 8.92e-141 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01752 K04554 - gmx:100778181 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01752 4 41598626 41603140 Rops4g01752 4 41598626 41603140 ECH