Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01732 ATGGTGGTAGCGGCAGGTTCTAAGTTCAATTTGAGAAGAGGGAACTGTTCTTCTCATAATGTTATAAATGATGGAGAACTTTCCAGAATCAATAAAAGTGGTTGTTTTTCATCATTGGCAGAAGTGGATAGAGACCCTTCTTGTGTTTCATTCACCACTTTCAACATCCTGGCTCCGATTTACAAAAGGGTTGATCCACAGAACCAGTGCCTCAGAGAAAGTGACTTCAGATCATTCTGGTTGGCAAGGAATGAAAAGATTCTTGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTCCAGGAATTTTGGGTTGGAAATGAAGAACTTGTTCACATGTATGAGGAGAGGCTTGGAGATGCTGGCTACCATCTCTTCAAGCTTGCCAGAACCAACAACCGTGGAGATGGTTTGCTGACTGCTATACGTAAAGAATATTTGAGTGCTTTGAATTATAGAGAGTTGCATTTTAATGATTGTGGTGATCGTGTTGCTCAGTTGTTACATGTTCAGTCAGTTGCTCCCTTTTTACAAAACCAAAAAGGCAGTTTTCACCAAGAGTTTCTGATTGTGAACACTCACTTGTTATTTCCTCATGATTCAAGTCTCTCTATAGTGAGATTGCATCAGGTTTACCAAATATTACAGTATGTGGAATTGTATCAGAGAGAAAACAGGCTCAAACCTATGCCTATAATACTTTGTGGTGACTGGAATGGAAGCAAGCGTGGGCATGTTTACAAGTTCCTTAGGTCTCAAGGATTTGTATCATCATATGATATTGCCAATCAATATACTGATAGTTATGCAGATGCTCACAAGCAGTGGGTTAGTCATCGAAACCATAGAGGAAACATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCTAACCAAGCACGTAAACCCTTGAAGACAAGTTGGGCTGAAGCTGTATTTAGTATACTAAAGTTCCAGCTACGAAAAAAATCATTATCTGAAGACGGTGATGCATTTGCCTTTTTGAAGGGTGACAACTATGCTGATTCTGTGACATATTATAGTTTCTCTGAAGCACTCCGTCAGTTAAAGTTAGTTGGTGTGCCTTATGGACTATGCTTTCAACAGTTGCAAGATCTTTGGAATCAAGTTGATGTTTTTGGAAATGGTGTCATCGACTTTGAAGAATTCAAGCAAAAGATTTGGAATTCTACATGTCCAGAGCATGTGTTGGAAAATTTTAATGAGTGTATGGAGGATGCAAATACAGAGCAGGATCAAGAAGCCATTGGTTTTAAGGTGAAAAATGCAATGCTGTTTCCACGTGAAGTGGAGAAAGGACTGTGGCCAGAAGATTACTCTCTTTCTGATCATGCTATGTTGACTGTTGTCTTTTCACCAGCAGAGTTGCAATGTTCTGGGTCATATAATGTACCTAGCTACTTCATGAAAGTATAG 1440 0.3944 MVVAAGSKFNLRRGNCSSHNVINDGELSRINKSGCFSSLAEVDRDPSCVSFTTFNILAPIYKRVDPQNQCLRESDFRSFWLARNEKILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYHLFKLARTNNRGDGLLTAIRKEYLSALNYRELHFNDCGDRVAQLLHVQSVAPFLQNQKGSFHQEFLIVNTHLLFPHDSSLSIVRLHQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYTDSYADAHKQWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKKSLSEDGDAFAFLKGDNYADSVTYYSFSEALRQLKLVGVPYGLCFQQLQDLWNQVDVFGNGVIDFEEFKQKIWNSTCPEHVLENFNECMEDANTEQDQEAIGFKVKNAMLFPREVEKGLWPEDYSLSDHAMLTVVFSPAELQCSGSYNVPSYFMKV* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01732 479 FunFam Putative calcium-binding protein 33 463 - -
Rops4g01732 479 Pfam Endonuclease/Exonuclease/phosphatase family 84 263 IPR005135 GO:0003824
Rops4g01732 479 SUPERFAMILY EF-hand 330 395 IPR011992 -
Rops4g01732 479 Gene3D Endonuclease/exonuclease/phosphatase 36 466 IPR036691 -
Rops4g01732 479 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 30 459 - -
Rops4g01732 479 SUPERFAMILY DNase I-like 43 275 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01732 Rops-Chr4 41404251 41408585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01732 114 467 EF-hand Containing Proteins AT1G02270 64.124 2.33e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01732 - - gmx:100777138 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01732 4 41404251 41408585 Rops4g01732 4 41404251 41408585 ECH