Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01696 ATGTCTTTCACTGCAACCAAGTTCACACACCCTCCTCTTCTTCCTATCAATTCCACTACCCCAAGATCCAATGACAAGTCTCTCTCTTTATCTTTCGATCTCTTAAGAGCCAGCCCTTCTTCCTCTTTCCTTGGATCCACACGCAAGCTTCTTCGCTTCAATGCTTTCACTAAGCCTCTTGCTCAACGCCGTTCATCATCATCACCTGTTGTTGCTGTTCTTCTTGAAAAAGCCTCCAATCTGCTTATTACAAAAGAGGAAGGGTTGGAGCTCTATGAAGACATGGTATTAGGGAGGGCCTTTGAAGACAAGTGTGCTGAGATGTATTATAGGGGAAAGATGTTTGGTTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGATTCATCAAGCTTCTGAAGAAAGAGGATTATGTAGTGAGCACCTACAGAGACCATGTTCATGCACTGAGTAAAGGGGTCCCTTCTAGGGCAGTGATGAGTGAACTCTTTGGGAAGGCAACAGGATGCTGCAGAGGTCAGGGTGGTTCAATGCATATGTTCTCAAAAGAGCACAACATGCTTGGTGGGTTTGCATTCATTGGTGAAGGAATTCCAGTGGCCATTGGGGCAGCATTTTCCAGTAAGTACAGAAGAGAGGTATTGAATCAGGCAGATGCTGATCAGGTGGCATTGGCATTTTTTGGAGATGGAACTTGTAATAATGGACAGTTCTATGAATGCCTAAACATGGCAGCTTTGTGGAAATTACCAATTGTGTTTGTGGTGGAAAATAATTTGTGGGCCATTGGGATGTCACATCTCAGGGCAACTTCAGATCCTCAGATATGGAGAAAGGGACCAGCATTTGGAATGCCAGGGGTTCATGTAGATGGGATGGATGTTTTGAAGGTAAGAGAGGTGGCAAAGGAGGCAATTCAAAGGGCTAGAAGAGGAGAAGGTCCAACTTTAGTGGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCTGATCCTGATGAGCTTCGTGACCCTGCTGAGAAGGAACATTATGCTGGTAGGGATCCCATCACTGCATTGAAGAAATACCTTCTTGAGAACAAATTAGCCAGTGAACAAGAATTGAAAACCATAGAGAAGAAAATCGATGAGGTCCTTGATGATGCTGTTGAATTTGCAGATAAGAGCCCTCTTCCACCCCGCAGCCAGCTTCTTGAGAATGTGTTTGCTGATCCAAAAGGTTTTGGGATTGGACCAGATGGCAAGTATAGATGTGAAGATCCAAAATTCACAGAAGGCACTGCTCAAGTCTAA 1302 0.4424 MSFTATKFTHPPLLPINSTTPRSNDKSLSLSFDLLRASPSSSFLGSTRKLLRFNAFTKPLAQRRSSSSPVVAVLLEKASNLLITKEEGLELYEDMVLGRAFEDKCAEMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDYVVSTYRDHVHALSKGVPSRAVMSELFGKATGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVAIGAAFSSKYRREVLNQADADQVALAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWRKGPAFGMPGVHVDGMDVLKVREVAKEAIQRARRGEGPTLVECETYRFRGHSLADPDELRDPAEKEHYAGRDPITALKKYLLENKLASEQELKTIEKKIDEVLDDAVEFADKSPLPPRSQLLENVFADPKGFGIGPDGKYRCEDPKFTEGTAQV* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01696 433 CDD TPP_E1_PDC_ADC_BCADC 91 389 - -
Rops4g01696 433 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 85 406 IPR017597 GO:0004739|GO:0006086|GO:0043231
Rops4g01696 433 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 76 416 - -
Rops4g01696 433 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 83 408 IPR029061 -
Rops4g01696 433 Gene3D - 57 415 - -
Rops4g01696 433 Pfam Dehydrogenase E1 component 94 395 IPR001017 GO:0016624
Rops4g01696 433 Coils Coil 364 384 - -
Rops4g01696 433 FunFam Pyruvate dehydrogenase E1 component subunit alpha 56 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01696 Rops-Chr4 40869884 40873298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01696 35 433 Acyl Lipid Metabolism Gene Families AT1G01090 82.382 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01696 K00161 - gmx:100811207 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01696 4 40869884 40873298 Rops4g01696 4 40869884 40873298 ECH